Bioinformatics

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Applying meta-analysis to Genotype-Tissue Expression data from multiple tissues to identify eQTLs and increase the number of eGenes
Dat Duong, Lisa Gai, Sagi Snir, Eun Yong Kang, Buhm Han, Jae Hoon Sul, Eleazar Eskin

bioRxiv 100701; doi: https://doi.org/10.1101/100701

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The 3D genome organization of Drosophila melanogaster through data integration
Qingjiao Li, Harianto Tjong, Xiao Li, Ke Gong, Xianghong Jasmine Zhou, Irene Chiolo, Frank Alber

bioRxiv 099911; doi: https://doi.org/10.1101/099911

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riboviz: analysis and visualization of ribosome profiling datasets
Oana Carja, Tongji Xing, Joshua B. Plotkin, Premal Shah

bioRxiv 100032; doi: https://doi.org/10.1101/100032

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CRISPR-RT: A web service for designing CRISPR-C2c2 crRNA with improved target specificity
Houxiang Zhu, Emily Richmond, Chun Liang

bioRxiv 099895; doi: https://doi.org/10.1101/099895

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DeeperBind: Enhancing Prediction of Sequence Specificities of DNA Binding Proteins
Hamid Reza Hassanzadeh, May D. Wang

bioRxiv 099754; doi: https://doi.org/10.1101/099754

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Biowheel: interactive visualization and exploration of biomedical data
Chenyue W. Hu, Alex J. Bisberg, Amina A. Qutub

bioRxiv 099739; doi: https://doi.org/10.1101/099739

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Using pseudoalignment and base quality to accurately quantify microbial community composition
M. Reppell, J. Novembre

bioRxiv 097949; doi: https://doi.org/10.1101/097949

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Utilization of network graph connectivity to evaluate complications of inpatient medical and surgical populations as a method to prioritize quality improvement efforts
Kattie Bear-Pfaffendorf

bioRxiv 099150; doi: https://doi.org/10.1101/099150 Confirmatory Results

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Automatic classification of diatoms of Merja fouarate
Nouzha Chahboune, Mohamed Mehdi, Allal Douira

bioRxiv 099135; doi: https://doi.org/10.1101/099135

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Snaptron: querying and visualizing splicing across tens of thousands of RNA-seq samples
Christopher Wilks, Phani Gaddipati, Abhinav Nellore, Ben Langmead

bioRxiv 097881; doi: https://doi.org/10.1101/097881

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