Bioinformatics

OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations
Michael P. Dunne, Steven Kelly

bioRxiv 098566; doi: https://doi.org/10.1101/098566

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Glimma: interactive graphics for gene expression analysis
Shian Su, Charity W. Law, Casey Ah-Cann, Marie-Liesse Asselin-Labat, Marnie E. Blewitt, Matthew E. Ritchie

bioRxiv 096107; doi: https://doi.org/10.1101/096107

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Integrative pharmacogenomics to infer large-scale drug taxonomy
Nehme El-Hachem, Deena M.A. Gendoo, Laleh Soltan Ghoraie, Zhaleh Safikhani, Petr Smirnov, Christina Chung, Kenan Deng, Ailsa Fang, Erin Birkwood, Chantal Ho, Ruth Isserlin, Gary D. Bader, Anna Goldenberg, Benjamin Haibe-Kains

bioRxiv 046219; doi: https://doi.org/10.1101/046219

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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren, Brian P. Walenz, Konstantin Berlin, Jason R. Miller, Nicholas H. Bergman, Adam M. Phillippy

bioRxiv 071282; doi: https://doi.org/10.1101/071282

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Multi-Region Neural Representation: A novel model for decoding visual stimuli in human brains
Muhammad Yousefnezhad, Daoqiang Zhang

bioRxiv 097675; doi: https://doi.org/10.1101/097675

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grID: A CRISPR-Cas9 guide RNA Database and Resource for Genome-Editing
Vinod Jaskula-Ranga, Donald J. Zack

bioRxiv 097352; doi: https://doi.org/10.1101/097352

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Training Genotype Callers with Neural Networks
Remi Torracinta, Fabien Campagne

bioRxiv 097469; doi: https://doi.org/10.1101/097469

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tensorBF: an R package for Bayesian tensor factorization
Suleiman A. Khan, Muhammad Ammad-ud-din

bioRxiv 097048; doi: https://doi.org/10.1101/097048

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Integrated deep learned transcriptomic and structure-based predictor of clinical trials outcomes
Artem V. Artemov, Evgeny Putin, Quentin Vanhaelen, Alexander Aliper, Ivan V. Ozerov, Alex Zhavoronkov

bioRxiv 095653; doi: https://doi.org/10.1101/095653

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Bio.Ontology - Python tools for enrichment analysis and visualization of ontologies
Kamil Koziara, Julia Herman-Izycka, Bartek Wilczynski

bioRxiv 097139; doi: https://doi.org/10.1101/097139

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Bioinformatics

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