Bioinformatics

Designing fecal microbiota transplant trials that account for differences in donor stool efficacy
Scott W. Olesen, Thomas Gurry, Eric J. Alm

bioRxiv 065383; doi: https://doi.org/10.1101/065383

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BioMake: a GNU Make-compatible utility for declarative workflow management
Ian H. Holmes, Christopher J. Mungall

bioRxiv 093245; doi: https://doi.org/10.1101/093245

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Historian: accurate reconstruction of ancestral sequences and evolutionary rates
Ian Holmes

bioRxiv 093161; doi: https://doi.org/10.1101/093161

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Cox-nnet: an artificial neural network method for prognosis prediction on high-throughput omics data
Travers Ching, Xun Zhu, Lana X. Garmire

bioRxiv 093021; doi: https://doi.org/10.1101/093021

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SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology
Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly Weedmark, Rahat Zaheer, Lee S. Katz, Celine Nadon, Aleisha Reimer, Eduardo Taboada, Robert G. Beiko, William Hsiao, Fiona Brinkman, Morag Graham, the IRIDA Consortium, Gary Van Domselaar

bioRxiv 092940; doi: https://doi.org/10.1101/092940

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High-dimensional regression over disease subgroups
Frank Dondelinger, Sach Mukherjee, The Alzheimer’s Disease Neuroimaging Initiative

bioRxiv 092825; doi: https://doi.org/10.1101/092825

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LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell
Jana Sperschneider, Ann-Maree Catanzariti, Kathleen DeBoer, Benjamin Petre, Donald M. Gardiner, Karam B Singh, Peter N. Dodds, Jennifer M. Taylor

bioRxiv 092726; doi: https://doi.org/10.1101/092726

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Characterization of Dependencies Between Growth and Division in Budding Yeast
Michael B. Mayhew, Edwin S. Iversen, Alexander J. Hartemink

bioRxiv 082735; doi: https://doi.org/10.1101/082735

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Detection and characterization of low and high genome coverage regions using an efficient running median and a double threshold approach
Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer

bioRxiv 092478; doi: https://doi.org/10.1101/092478

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Complete fold annotation of the human proteome using a novel structural feature space
Sarah A. Middleton, Joseph Illuminati, Junhyong Kim

bioRxiv 092379; doi: https://doi.org/10.1101/092379

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Bioinformatics

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