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  • Impact of knowledge accumulation on pathway enrichment analysis
    Lina Wadi, Mona Meyer, Joel Weiser, Lincoln D. Stein, Jüri Reimand
    bioRxiv 049288; doi: https://doi.org/10.1101/049288
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  • Mash: fast genome and metagenome distance estimation using MinHash
    Brian D. Ondov, Todd J. Treangen, Páll Melsted, Adam B. Mallonee, Nicholas H. Bergman, Sergey Koren, Adam M. Phillippy
    bioRxiv 029827; doi: https://doi.org/10.1101/029827
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  • AC-PCA: simultaneous dimension reduction and adjustment for confounding variation
    Zhixiang Lin, Can Yang, Ying Zhu, John C. Duchi, Yao Fu, Yong Wang, Bai Jiang, Mahdi Zamanighomi, Xuming Xu, Mingfeng Li, Nenad Sestan, Hongyu Zhao, Wing Hung Wong
    bioRxiv 040485; doi: https://doi.org/10.1101/040485
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  • Omics Discovery Index - Discovering and Linking Public ‘Omics’ Datasets
    Yasset Perez-Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug, Adam J. Carroll, Dylan Spalding, Justin Paschall, Mingxun Wang, Noemi del-Toro, Tobias Ternent, Peng Zhang, Nicola Buso, Nuno Bandeira, Eric W. Deutsch, David S Campbell, Ronald C. Beavis, Reza M. Salek, Alexey I. Nesvizhskii, Susanna-Assunta Sansone, Christoph Steinbeck, Rodrigo Lopez, Juan Antonio Vizcaíno, Peipei Ping, Henning Hermjakob
    bioRxiv 049205; doi: https://doi.org/10.1101/049205
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  • Network-based Computational Drug Combination Prediction
    Fuhai Li, Huang Lei, Jianting Sheng, Stephen Wong
    bioRxiv 049015; doi: https://doi.org/10.1101/049015
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  • Convert Your Favorite Protein Modeling Program Into A Mutation Predictor: “MODICT”
    Ibrahim Tanyalcin, Katrien Stouffs, Dorien Daneels, Carla Al Assaf, Willy Lissens, Anna Jansen, Alexander Gheldof
    bioRxiv 038992; doi: https://doi.org/10.1101/038992
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  • Variance Adaptive Shrinkage (vash): Flexible Empirical Bayes estimation of variances
    Mengyin Lu, Matthew Stephens
    bioRxiv 048660; doi: https://doi.org/10.1101/048660
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  • Assembly of Long Error-Prone Reads Using de Bruijn Graphs
    Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W. Shen, Pavel A. Pevzner
    bioRxiv 048413; doi: https://doi.org/10.1101/048413
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  • Third-generation sequencing and the future of genomics
    Hayan Lee, James Gurtowski, Shinjae Yoo, Maria Nattestad, Shoshana Marcus, Sara Goodwin, W. Richard McCombie, Michael C. Schatz
    bioRxiv 048603; doi: https://doi.org/10.1101/048603
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  • Assessment of pharmacogenomic agreement
    Zhaleh Safikhani, Nehme El-Hachem, Rene Quevedo, Petr Smirnov, Anna Goldenberg, Nicolai Juul Birkbak, Christopher E. Mason, Christos Hatzis, Leming Shi, Hugo JWL Aerts, John Quackenbush, Benjamin Haibe-Kains
    bioRxiv 048470; doi: https://doi.org/10.1101/048470 Contradictory Results
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