Bioinformatics

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Evaluating performance of metagenomic characterization algorithms using in silico datasets generated with FASTQSim
Anna Shcherbina, Darrell O. Ricke, Nelson Chiu

bioRxiv 046532; doi: https://doi.org/10.1101/046532

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OncoPhase: Quantification of somatic mutation cellular prevalence using phase information
Donatien Chedom-Fotso, Ahmed Ashour Ahmed, Christopher Yau

bioRxiv 046631; doi: https://doi.org/10.1101/046631

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Sensitive detection of rare disease-associated cell subsets via representation learning
Eirini Arvaniti, Manfred Claassen

bioRxiv 046508; doi: https://doi.org/10.1101/046508

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FOCUS2: agile and sensitive classification of metagenomics data using a reduced database
Genivaldo Gueiros Z. Silva, Bas E. Dutilh, Robert A. Edwards

bioRxiv 046425; doi: https://doi.org/10.1101/046425

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Zika virus outbreak in the Americas: Is Aedes albopictus an overlooked culprit?
Azeem Mehmood Butt, Izza Nasrullah, Raheel Qamar, Yigang Tong

bioRxiv 044594; doi: https://doi.org/10.1101/044594

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Data-driven hypothesis weighting increases detection power in multiple testing
Nikolaos Ignatiadis, Bernd Klaus, Judith Zaugg, Wolfgang Huber

bioRxiv 034330; doi: https://doi.org/10.1101/034330

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SAMSA: A comprehensive metatranscriptome analysis pipeline
Samuel T Westreich, Ian Korf, David A. Mills, Danielle G Lemay

bioRxiv 046201; doi: https://doi.org/10.1101/046201

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BIGMAC: Breaking Inaccurate Genomes and Merging Assembled Contigs for long read metagenomic assembly
Ka-Kit Lam, Richard Hall, Alicia Clum, Satish Rao

bioRxiv 045690; doi: https://doi.org/10.1101/045690

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dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data
Sergi Sayols, Denise Scherzinger, Holger Klein

bioRxiv 046243; doi: https://doi.org/10.1101/046243

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SCPattern: A statistical approach to identify and classify expression changes in single cell RNA-seq experiments with ordered conditions
Ning Leng, Li-Fang Chu, Jeea Choi, Christina Kendziorski, James A. Thomson, Ron Stewart

bioRxiv 046110; doi: https://doi.org/10.1101/046110

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