Bioinformatics

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
Prashant Pandey, Fatemeh Almodaresi, Michael A. Bender, Michael Ferdman, Rob Johnson, Rob Patro

bioRxiv 217372; doi: https://doi.org/10.1101/217372

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Efficient and accurate detection of splice junctions from RNAseq with Portcullis
Daniel Mapleson, Luca Venturini, Gemy Kaithakottil, David Swarbreck

bioRxiv 217620; doi: https://doi.org/10.1101/217620

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Mining the forest: uncovering biological mechanisms by interpreting Random Forests
Julian de Ruiter, Theo Knijnenburg, Jeroen de Ridder

bioRxiv 217695; doi: https://doi.org/10.1101/217695

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MODE-TASK: Large-scale protein motion tools
Caroline Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop

bioRxiv 217505; doi: https://doi.org/10.1101/217505

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Deep2Full: Predictive model for complementing phenotypic outcomes in a deep mutational scan using protein sequence and structure information
C. K. Sruthi, Meher K. Prakash

bioRxiv 217158; doi: https://doi.org/10.1101/217158

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Accurate detection of HIV transmission clusters from phylogenetic trees using a multi-state birth-death model
Joëlle Barido-Sottani, Tanja Stadler

bioRxiv 215491; doi: https://doi.org/10.1101/215491

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Improving the calling of non-invasive prenatal testing on 13-/18-/21-trisomy by support vector machine discrimination
Jianfeng Yang, Xiaofan Ding, Weidong Zhu

bioRxiv 216689; doi: https://doi.org/10.1101/216689

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Ennet: construction of potential cancer-driving networks based on somatic enhancer mutations only
Ya Cui, Yiwei Niu, Xueyi Teng, Dan Wang, Huaxia Luo, Peng Zhang, Wei Wu, Shunmin He, Jianjun Luo, Runsheng Chen

bioRxiv 216226; doi: https://doi.org/10.1101/216226

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A tangled tale of convergence and divergence: archaeal chromosomal proteins and Chromo-like domains in bacteria and eukaryotes
Gurmeet Kaur, Lakshminarayan M. Iyer, Srikrishna Subramanian, L. Aravind

bioRxiv 217323; doi: https://doi.org/10.1101/217323

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MRIQC Web-API: Crowdsourcing image quality metrics and expert quality ratings of structural and functional MRI
O. Esteban, RW. Blair, DM. Nielson, JC. Varada, S. Marrett, AG. Thomas, RA. Poldrack, KJ. Gorgolewski

bioRxiv 216671; doi: https://doi.org/10.1101/216671

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Bioinformatics

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