Bioinformatics

APEC: an accesson-based method for single-cell chromatin accessibility analysis
Bin Li, Young Li, Kun Li, Lianbang Zhu, Qiaoni Yu, Pengfei Cai, Jingwen Fang, Wen Zhang, Pengcheng Du, Chen Jiang, Kun Qu

bioRxiv 646331; doi: https://doi.org/10.1101/646331 New Results

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Reference-free deconvolution of complex DNA methylation data – a detailed protocol
Michael Scherer, Petr V. Nazarov, Reka Toth, Shashwat Sahay, Tony Kaoma, Valentin Maurer, Christoph Plass, Thomas Lengauer, Jörn Walter, Pavlo Lutsik

bioRxiv 853150; doi: https://doi.org/10.1101/853150 New Results

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Learning to Fold RNAs in Linear Time
F A Rezaur Rahman Chowdhury, He Zhang, Liang Huang

bioRxiv 852871; doi: https://doi.org/10.1101/852871 New Results

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SciApps: A Cloud-Based Platform for Analyses and Distribution of the MaizeCODE data
Liya Wang, Zhenyuan Lu, Melissa delaBastide, Peter Van Buren, Xiaofei Wang, Cornel Ghiban, Michael Regulski, Jorg Drenkow, Xiaosa Xu, Carlos Ortiz Ramirez, Cristina F. Marco, Jason Williams, Alexander Dobin, Kenneth D. Birnbaum, David P. Jackson, Robert A. Martienssen, William R. McCombie, David A. Micklos, Michael C. Schatz, Doreen H. Ware, Thomas R. Gingeras

bioRxiv 852269; doi: https://doi.org/10.1101/852269 New Results

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Estimating mutual information under measurement error
Cong Ma, Carl Kingsford

bioRxiv 852384; doi: https://doi.org/10.1101/852384 New Results

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In silico investigation of Y220C mutant p53 for lead design
Mayank Roy Chowdhury, Anamika Tiwari, G.P. Dubey

bioRxiv 820761; doi: https://doi.org/10.1101/820761 Confirmatory Results

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Complementary Performances of Convolutional and Capsule Neural Networks on Classifying Microfluidic Images of Dividing Yeast Cells
Mehran Ghafari, Justin Clark, Hao-Bo Guo, Ruofan Yu, Yu Sun, Weiwei Dang, Hong Qin

bioRxiv 852566; doi: https://doi.org/10.1101/852566 New Results

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Scalable Phylogenetic Profiling using MinHash Uncovers Likely Eukaryotic Sexual Reproduction Genes
David Moi, Laurent Kilchoer, Pablo S. Aguilar, Christophe Dessimoz

bioRxiv 852491; doi: https://doi.org/10.1101/852491 New Results

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Multi-omics Visualization Platform: An extensible Galaxy plug-In for multi-omics data visualization and exploration
Thomas McGowan, James E. Johnson, Praveen Kumar, Ray Sajulga, Subina Mehta, Pratik D. Jagtap, Timothy J. Griffin

bioRxiv 842856; doi: https://doi.org/10.1101/842856 New Results

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VADR: validation and annotation of virus sequence submissions to GenBank
Alejandro A Schäffer, Eneida L Hatcher, Linda Yankie, Lara Shonkwiler, J Rodney Brister, Ilene Karsch-Mizrachi, Eric P Nawrocki

bioRxiv 852657; doi: https://doi.org/10.1101/852657 New Results

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Bioinformatics

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