Bioinformatics

SSEalign: accurate function prediction of bacterial unannotated protein, based on effective training dataset
Zhiyuan Yang, Stephen Kwok-Wing Tsui

bioRxiv 200915; doi: https://doi.org/10.1101/200915

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Tribe: The collaborative platform for reproducible web-based analysis of gene sets
René A. Zelaya, Aaron K. Wong, Alex T. Frase, Marylyn D. Ritchie, Casey S. Greene

bioRxiv 055913; doi: https://doi.org/10.1101/055913

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DGIdb 3.0: a redesign and expansion of the drug-gene interaction database
Kelsy C. Cotto, Alex H. Wagner, Yang-Yang Feng, Susanna Kiwala, Adam C. Coffman, Greg Spies, Alex Wollam, Nick Spies, Obi L. Griffith, Malachi Griffith

bioRxiv 200527; doi: https://doi.org/10.1101/200527

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A transcriptome and literature guided algorithm for reconstruction of pathways to assess activity of telomere maintenance mechanisms
Lilit Nersisyan, Arsen Arakelyan

bioRxiv 200535; doi: https://doi.org/10.1101/200535

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Vital signs analysis algorithm detects inflammatory response in premature infants with late onset sepsis and necrotizing enterocolitis
Leena B. Mithal, Ram Yogev, Hannah L. Palac, Daniel Kaminsky, Ilan Gur, Karen K. Mestan

bioRxiv 200329; doi: https://doi.org/10.1101/200329

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Re-Identification of Individuals in Genomic Data-Sharing Beacons via Allele Inference
Nora von Thenen, Erman Ayday, A. Ercument Cicek

bioRxiv 200147; doi: https://doi.org/10.1101/200147

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Delta integrates 3D physical structure with topology and genomic data of chromosomes
Bixia Tang, Feifei Li, Jing Li, Wenming Zhao, Zhihua Zhang

bioRxiv 199950; doi: https://doi.org/10.1101/199950

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Mapping Patient Trajectories using Longitudinal Extraction and Deep Learning in the MIMIC-III Critical Care Database
Brett K. Beaulieu-Jones, Patryk Orzechowski, Jason H. Moore

bioRxiv 177428; doi: https://doi.org/10.1101/177428

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VASC: dimension reduction and visualization of single cell RNA sequencing data by deep variational autoencoder
Dongfang Wang, Jin Gu

bioRxiv 199315; doi: https://doi.org/10.1101/199315

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CogStack - Experiences of Deploying Integrated Information Retrieval and Extraction Services in a Large National Health Service Foundation Trust Hospital
Richard Jackson, Ismail Kartoglu, Asha Agrawal, Kenneth Lui, Honghan Wu, Tudor Groza, Angus Roberts, Genevieve Gorrell, Xingyi Song, Damian Lewsley, Doug Northwood, Amos Folarin, Clive Stringer, Robert Stewart, Richard Dobson

bioRxiv 123299; doi: https://doi.org/10.1101/123299

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Bioinformatics

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