Bioinformatics

An image processing method for metagenomic binning: multi-resolution genomic binary patterns
Samaneh Kouchaki, Avraam Tapinos, David L Robertson

bioRxiv 096719; doi: https://doi.org/10.1101/096719

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Dense and accurate whole-chromosome haplotyping of individual genomes
David Porubsky, Shilpa Garg, Ashley D. Sanders, Jan O. Korbel, Victor Guryev, Peter M. Lansdorp, Tobias Marschall

bioRxiv 126136; doi: https://doi.org/10.1101/126136

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QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization
Wen He, Shanrong Zhao, Chi Zhang, Michael S. Vincent, Baohong Zhang

bioRxiv 125856; doi: https://doi.org/10.1101/125856

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Faucet: streaming de novo assembly graph construction
Roye Rozov, Gil Goldshlager, Eran Halperin, Ron Shamir

bioRxiv 125658; doi: https://doi.org/10.1101/125658

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GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
Chong Chu, Xin Li, Yufeng Wu

bioRxiv 125534; doi: https://doi.org/10.1101/125534

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GSA-Genie: a web application for gene set analysis
Zhe Zhang, Deanne Taylor

bioRxiv 125443; doi: https://doi.org/10.1101/125443

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DeepBound: Accurate Identification of Transcript Boundaries via Deep Convolutional Neural Fields
Mingfu Shao, Jianzhu Ma, Sheng Wang

bioRxiv 125229; doi: https://doi.org/10.1101/125229

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RNA-seq 2G: online analysis of differential gene expression with comprehensive options of statistical methods
Zhe Zhang, Yuanchao Zhang, Perry Evans, Asif Chinwalla, Deanne Taylor

bioRxiv 122747; doi: https://doi.org/10.1101/122747

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ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
Martin Hunt, Alison E. Mather, Leonor Sánchez-Busó, Andrew J. Page, Julian Parkhill, Jacqueline A. Keane, Simon R. Harris

bioRxiv 118000; doi: https://doi.org/10.1101/118000

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Cycledash: a web application for the interactive analysis and exploration of variants
Isaac Hodes, Dan Vanderkam, Tavi Nathanson, B. Arman Aksoy, Jaclyn Perrone, Jeff Hammerbacher

bioRxiv 125153; doi: https://doi.org/10.1101/125153

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Bioinformatics

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