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  • Selection Corrected Statistical Inference for Region Detection with High-throughput Assays
    Yuval Benjamini, Jonathan Taylor, Rafael A. Irizarry
    bioRxiv 082321; doi: https://doi.org/10.1101/082321
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  • Rabix: an open-source workflow executor supporting recomputability and interoperability of workflow descriptions
    Gaurav Kaushik, Sinisa Ivkovic, Janko Simonovic, Nebojsa Tijanic, Brandi Davis-Dusenbery, Deniz Kural
    bioRxiv 074708; doi: https://doi.org/10.1101/074708
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  • Methods for detecting co-mutated pathways in cancer samples to inform treatment selection
    Tingting Jiang, Uri Shaham, Fabio Parisi, Ruth Halaban, Anton Safonov, Harriet Kluger, Sherman Weissman, Joseph Chang, Yuval Kluger
    bioRxiv 082552; doi: https://doi.org/10.1101/082552
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  • Transformation and model choice for RNA-seq co-expression analysis
    Andrea Rau, Cathy Maugis-Rabusseau
    bioRxiv 065607; doi: https://doi.org/10.1101/065607
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  • Lowest expressing microRNAs capture indispensable information: identifying cancer types
    Roni Rasnic, Nathan Linial, Michal Linial
    bioRxiv 082081; doi: https://doi.org/10.1101/082081
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  • Ribbon: Visualizing complex genome alignments and structural variation
    Maria Nattestad, Chen-Shan Chin, Michael C. Schatz
    bioRxiv 082123; doi: https://doi.org/10.1101/082123
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  • Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data
    Joseph N. Paulson, Cho-Yi Chen, Camila M. Lopes-Ramos, Marieke L Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush
    bioRxiv 081802; doi: https://doi.org/10.1101/081802 New Results
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  • Portable and Error-Free DNA-Based Data Storage
    S. M. Hossein Tabatabaei Yazdi, Ryan Gabrys, Olgica Milenkovic
    bioRxiv 079442; doi: https://doi.org/10.1101/079442
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  • Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
    Florian Schmidt, Nina Gasparoni, Gilles Gasparoni, Kathrin Gianmoena, Cristina Cadenas, Julia K. Polansky, Peter Ebert, Karl Nordström, Matthias Barann, Anupam Sinha, Sebastian Fröhler, Jieyi Xiong, Azim Dehghani Amirabad, Fatemeh Behjati Ardakani, Barbara Hutter, Gideon Zipprich, Bärbel Felder, Jürgen Eils, Benedikt Brors, Wei Chen, Jan G. Hengstler, Alf Hamann, Thomas Lengauer, Philip Rosenstiel, Jörn Walter, Marcel H. Schulz
    bioRxiv 081935; doi: https://doi.org/10.1101/081935
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  • False Negatives Are a Significant Feature of Next Generation Sequencing Callsets
    Dean Bobo, Mikhail Lipatov, Juan L. Rodriguez-Flores, Adam Auton, Brenna M. Henn
    bioRxiv 066043; doi: https://doi.org/10.1101/066043 Contradictory Results
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