Bioinformatics

SINTAX: a simple non-Bayesian taxonomy classifier for 16S and ITS sequences
Robert C. Edgar

bioRxiv 074161; doi: https://doi.org/10.1101/074161

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A framework for RNA quality correction in differential expression analysis
Andrew E. Jaffe, Ran Tao, Alexis L. Norris, Marc Kealhofer, Abhinav Nellore, Yankai Jia, Thomas M. Hyde, Joel E. Kleinman, Richard E. Straub, Jeffrey T. Leek, Daniel R. Weinberger

bioRxiv 074245; doi: https://doi.org/10.1101/074245

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Optimal Point Process Filtering and Estimation of the Coalescent Process
Kris V Parag, Oliver G Pybus

bioRxiv 024737; doi: https://doi.org/10.1101/024737

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MTQuant: “Seeing” Beyond the Diffraction Limit in Fluorescence Images to Quantify Neuronal Microtubule Organization
Roshni Cooper, Shaul Yogev, Kang Shen, Mark Horowitz

bioRxiv 074047; doi: https://doi.org/10.1101/074047

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Secondary-structure prediction revisited: Pβ and Pc represent structures of amyloids and aid elucidating phenomena in interspecies transmissions of prion
Yuzuru Taguchi, Noriyuki Nishida

bioRxiv 073668; doi: https://doi.org/10.1101/073668

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Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data
Aaron T. L. Lun, John C. Marioni

bioRxiv 073973; doi: https://doi.org/10.1101/073973

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De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning
Christopher Quince, Stephanie Connelly, Sébastien Raguideau, Johannes Alneberg, Seung Gu Shin, Gavin Collins, A. Murat Eren

bioRxiv 073825; doi: https://doi.org/10.1101/073825

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SVScore: An Impact Prediction Tool For Structural Variation
Liron Ganel, Haley J. Abel, Ira M. Hall

bioRxiv 073833; doi: https://doi.org/10.1101/073833

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A Common Class of Transcripts with 5′-Intron Depletion, Distinct Early Coding Sequence Features, and N¹-Methyladenosine Modification
Can Cenik, Hon Nian Chua, Guramrit Singh, Abdalla Akef, Michael P Snyder, Alexander F. Palazzo, Melissa J Moore, Frederick P Roth

bioRxiv 057455; doi: https://doi.org/10.1101/057455

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LoRTE: Detecting transposon-induced genomic variants using low coverage PacBio long read sequences
Eric Disdero, Jonathan Filée

bioRxiv 073551; doi: https://doi.org/10.1101/073551

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Bioinformatics

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