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  • Phenopolis: an open platform for harmonization and analysis of sequencing and phenotype data
    Nikolas Pontikos, Jing Yu, Fiona Blanco-Kelly, Tom Vulliamy, Tsz Lun Wong, Cian Murphy, Valentina Cipriani, Alessia Fiorentino, Gavin Arno, Daniel Greene, Julius OB Jacobsen, Tristan Clark, David S Gregory, Andrea Nemeth, Stephanie Halford, Susan Downes, Graeme C Black, Andrew R Webster, Alison Hardcastle, Vincent Plagnol
    bioRxiv 084582; doi: https://doi.org/10.1101/084582
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  • EuMicrobedbLite: A lightweight genomic resource and analytic platform for draft oomycete genomes
    Arijit Panda, Diya Sen, Arup Ghosh, Akash Gupta, Malar C Mathu, Gyan Prakash Mishra, Deeksha Singh, Wenwu Ye, Brett M. Tyler, Sucheta Tripathy
    bioRxiv 084483; doi: https://doi.org/10.1101/084483
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  • Automatic genome segmentation with HMM-ANN hybrid models
    Li Shen
    bioRxiv 034579; doi: https://doi.org/10.1101/034579
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  • Accurate prediction of human essential genes using only nucleotide composition and association information
    Feng-Biao Biao, Chuan Dong, Hong-Li Hua, Shuo Liu, Hao Luo, Hong-Wan Zhang, Yan-Ting Jin, Kai-Yue Zhang
    bioRxiv 084129; doi: https://doi.org/10.1101/084129
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  • Gist – an ensemble approach to the taxonomic classification of metatranscriptomic sequence data
    Samantha Halliday, John Parkinson
    bioRxiv 081026; doi: https://doi.org/10.1101/081026
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  • PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF
    Genevieve L Stein-O’Brien, Jacob L Carey, Wai-shing Lee, Michael Considine, Alexander V Favorov, Emily Flam, Theresa Guo, Sijia Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A Gaykalova, Ronald D McKay, Michael F Ochs, Carlo Colantuoni, Elana J Fertig
    bioRxiv 083717; doi: https://doi.org/10.1101/083717 Confirmatory Results
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  • Mocap: Large-scale inference of transcription factor binding sites from chromatin accessibility
    Xi Chen, Bowen Yu, Nicholas Carriero, Claudio Silva, Richard Bonneau
    bioRxiv 083998; doi: https://doi.org/10.1101/083998
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  • Falco: A quick and flexible single-cell RNA-seq processing framework on the cloud
    Andrian Yang, Michael Troup, Peijie Lin, Joshua W. K. Ho
    bioRxiv 064006; doi: https://doi.org/10.1101/064006 New Results
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  • HBP: an integrative and flexible pipeline for the interaction analysis of Hi-C dataset
    Chao He, Ping Li, Minglei Shi, Yan Zhang, Bingyu Ye, Dejian Xie, Wenlong Shen, Zhihu Zhao
    bioRxiv 083576; doi: https://doi.org/10.1101/083576
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  • Connecting tumor genomics with therapeutics through multi-dimensional network modules
    James T. Webber, Max V. Ranall, Swati Kaushik, Sourav Bandyopadhyay
    bioRxiv 083410; doi: https://doi.org/10.1101/083410
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