Bioinformatics

Fast haplotype matching in very large cohorts using the Li and Stephens model
Gerton Lunter

bioRxiv 048280; doi: https://doi.org/10.1101/048280

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Implementation of an Open Source Software solution for Laboratory Information Management and automated RNAseq data analysis in a large-scale Cancer Genomics initiative using BASE with extension package Reggie
Jari Häkkinen, Nicklas Nordborg, Olle Månsson, Johan Vallon-Christersson

bioRxiv 038976; doi: https://doi.org/10.1101/038976

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A method for downstream analysis of gene set enrichment results facilitates the biological interpretation of vaccine efficacy studies
Yan Tan, Jernej Godec, Felix Wu, Pablo Tamayo, Jill P. Mesirov, W. Nicholas Haining

bioRxiv 043158; doi: https://doi.org/10.1101/043158 New Results

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In-silico analysis of Salmonella typhimurium and E.coli Methionyl tRNA synthetase at primary, secondary, tertiary level with protein disorder and functional association of differences
Prabhakar B. Ghorpade, Pooja Kadu, Amit Pandey, Yogesh Banger, Bhaskar Sharma

bioRxiv 048009; doi: https://doi.org/10.1101/048009

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SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data
Joshua D. Welch, Alexander Hartemink, Jan F. Prins

bioRxiv 047845; doi: https://doi.org/10.1101/047845

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Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences
Matthias Siebert, Johannes Söding

bioRxiv 047647; doi: https://doi.org/10.1101/047647

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PALADIN:Protein Alignment for Functional Profiling Whole Metagenome Shotgun Data
Anthony Westbrook, Jordan Ramsdell, Taruna Aggarwal, Louisa Normington, R. Daniel Bergeron, W. Kelley Thomas, Matthew MacManes

bioRxiv 047712; doi: https://doi.org/10.1101/047712

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Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION^TM sequencing
Minh Duc Cao, Devika Ganesamoorthy, Alysha G. Elliott, Huihui Zhang, Matthew A. Cooper, Lachlan Coin

bioRxiv 019356; doi: https://doi.org/10.1101/019356

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Human CODIS STR Loci Profiling from HTS Data
Darrell O. Ricke, Martha Petrovick, Johanna Bobrow, Tara Boettcher, Christina Zook, James Harper, Edward Wack, Eric Schwoebel

bioRxiv 047225; doi: https://doi.org/10.1101/047225

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KinLinks: Software Toolkit for Kinship Analysis and Pedigree Generation from HTS Datasets
Anna Shcherbina, Darrell O. Ricke, Eric Schwoebel, Tara Boettcher, Christina Zook, Johanna Bobrow, Martha Petrovick, Edward Wack

bioRxiv 046938; doi: https://doi.org/10.1101/046938

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Bioinformatics

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