Bioinformatics

RAPDOR: Using Jensen-Shannon Distance for the computational analysis of complex proteomics datasets
Luisa Hemm, Dominik Rabsch, Halie Rae, Viktoria Reimann, Philip Gerth, Juergen Bartel, Manuel Brenes, Sandra Maass, Doerte Becher, Wolfgang R. Hess, Rolf Backofen

bioRxiv 2024.09.30.615781; doi: https://doi.org/10.1101/2024.09.30.615781 New Results

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SAMURAI: Shallow Analysis of Copy nuMber alterations Using a Reproducible And Integrated bioinformatics pipeline
Sara Potente, Diego Boscarino, Dino Paladin, Sergio Marchini, Luca Beltrame, Chiara Romualdi

bioRxiv 2024.09.30.615766; doi: https://doi.org/10.1101/2024.09.30.615766 New Results

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Capturing the Hierarchically Assorted Protein-protein Interaction Modules of Mammalian Cell
Shuaijian Dai, Yage Zhang, Weichuan Yu, Ning Li

bioRxiv 2024.09.30.615776; doi: https://doi.org/10.1101/2024.09.30.615776 New Results

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Separating biological variance from noise by applying EM algorithm to modified General Linear Model
Tien-Wen Lee

bioRxiv 2024.09.29.615661; doi: https://doi.org/10.1101/2024.09.29.615661 New Results

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Advancing Protein-DNA Binding Site Prediction: Integrating Sequence Models and Machine Learning Classifiers
Taslim Murad, Prakash Chourasia, Sarwan Ali, Murray Patterson

bioRxiv 2023.08.23.554389; doi: https://doi.org/10.1101/2023.08.23.554389 New Results

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Exploring the link between extended red blood cell parameters and platelet indices in voluntary blood donors
Ranita De, Deepak Marballi Basavaraju, Leo Stephen, Kavitha Lakshmi, Joy Mammen, Eunice Sindhuvi Edison

bioRxiv 2024.09.29.615743; doi: https://doi.org/10.1101/2024.09.29.615743 New Results

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PlasmidGPT: a generative framework for plasmid design and annotation
BIN SHAO

bioRxiv 2024.09.30.615762; doi: https://doi.org/10.1101/2024.09.30.615762 New Results

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Non-detection during excursions by citizen scientists modeled as a function of weather, season, list length, and individual preferences
Gert W Jacobusse, Eelke Jongejans

bioRxiv 2024.09.30.615418; doi: https://doi.org/10.1101/2024.09.30.615418 New Results

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Unlocking the Potential of Low Quality Total RNA-seq Data: A Stepwise Mapping Approach for Improved Quantitative Analyses
Jiwoon Lee, Jungsoo Gim

bioRxiv 2024.09.30.615750; doi: https://doi.org/10.1101/2024.09.30.615750 New Results

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STIX: Long-reads based Accurate Structural Variation Annotation at Population Scale
Xinchang Zheng, Murad Chowdhury, Behzod Mirpochoev, Aaron Clauset, Ryan M Layer, Fritz J Sedlazeck

bioRxiv 2024.09.30.615931; doi: https://doi.org/10.1101/2024.09.30.615931 New Results

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Bioinformatics

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