Bioinformatics

Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE
Yupei You, Yair D.J. Prawer, Ricardo De Paoli-Iseppi, Cameron P.J. Hunt, Clare L. Parish, Heejung Shim, Michael B. Clark

bioRxiv 2022.08.16.504056; doi: https://doi.org/10.1101/2022.08.16.504056 New Results

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syntenet: an R/Bioconductor package for the inference and analysis of synteny networks
Fabricio Almeida-Silva, Tao Zhao, Kristian K. Ullrich, Yves Van de Peer

bioRxiv 2022.08.16.504079; doi: https://doi.org/10.1101/2022.08.16.504079 New Results

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A pan-cancer analysis of the oncogenic role of COVID-19 risk gene Leucine Zipper Transcription Factor-Like Protein 1 (LZTFL1) in human tumors
Jihao Mo, Zhenzhen Zhang, Daping Wang, Meimei Wang, Lei Wang

bioRxiv 2022.08.14.503890; doi: https://doi.org/10.1101/2022.08.14.503890 New Results

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ARAX: a graph-based modular reasoning tool for translational biomedicine
Amy K. Glen, Chunyu Ma, Luis Mendoza, Finn Womack, E. C. Wood, Meghamala Sinha, Liliana Acevedo, Lindsey G. Kvarfordt, Ross C. Peene, Shaopeng Liu, Andrew S. Hoffman, Jared C. Roach, Eric W. Deutsch, Stephen A. Ramsey, David Koslicki

bioRxiv 2022.08.12.503810; doi: https://doi.org/10.1101/2022.08.12.503810 New Results

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The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual
Kuan-Hao Chao, Aleksey V Zimin, Mihaela Pertea, Steven L Salzberg

bioRxiv 2022.08.08.503226; doi: https://doi.org/10.1101/2022.08.08.503226 New Results

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Finding rearrangements in nanopore DNA reads with last and dnarrange
Martin C. Frith, Satomi Mitsuhashi

bioRxiv 2022.05.30.494079; doi: https://doi.org/10.1101/2022.05.30.494079 New Results

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Deep Learning-based Phenotype Imputation on Population-scale Biobank Data Increases Genetic Discoveries
Ulzee An, Ali Pazokitoroudi, Marcus Alvarez, Lianyun Huang, Silviu Bacanu, Andrew J. Schork, Kenneth Kendler, Päivi Pajukanta, Jonathan Flint, Noah Zaitlen, Na Cai, Andy Dahl, Sriram Sankararaman

bioRxiv 2022.08.15.503991; doi: https://doi.org/10.1101/2022.08.15.503991 New Results

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The Protein Common Assembly Database (ProtCAD) – A comprehensive structural resource of protein complexes
Qifang Xu, Roland L. Dunbrack Jr.

bioRxiv 2022.08.15.503938; doi: https://doi.org/10.1101/2022.08.15.503938 New Results

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SETH predicts nuances of residue disorder from protein embeddings
Dagmar Ilzhoefer, Michael Heinzinger, Burkhard Rost

bioRxiv 2022.06.23.497276; doi: https://doi.org/10.1101/2022.06.23.497276 New Results

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Bioinformatics analysis in identifying significantly expressed immune related genes in influenza A virus infection
Ayinde Olaniyi, Alabi Oluwabunmi, Oguntoye Oluwatobi

bioRxiv 2022.08.15.503998; doi: https://doi.org/10.1101/2022.08.15.503998 New Results

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Bioinformatics

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