Bioinformatics

Image-based methods for phenotyping growth dynamics and fitness components in Arabidopsis thaliana
François Vasseur, George Wang, Justine Bresson, Rebecca Schwab, Detlef Weigel

bioRxiv 208512; doi: https://doi.org/10.1101/208512

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Linear models enable powerful differential activity analysis in massively parallel reporter assays
Leslie Myint, Dimitrios G. Avramopoulos, Loyal A. Goff, Kasper D. Hansen

bioRxiv 196394; doi: https://doi.org/10.1101/196394

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TreeCluster: Massively scalable transmission clustering using phylogenetic trees
Niema Moshiri

bioRxiv 261354; doi: https://doi.org/10.1101/261354

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MARGE: Mutation Analysis for Regulatory Genomic Elements
Verena M. Link, Casey E. Romanoski, Dirk Metzler, Christopher K. Glass

bioRxiv 268839; doi: https://doi.org/10.1101/268839

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Accelerated brain aging towards transcriptional inversion in a zebrafish model of familial Alzheimer’s disease
Nhi Hin, Morgan Newman, Jan Kaslin, Alon M. Douek, Amanda Lumsden, Xin-Fu Zhou, Alastair Ludington, David L. Adelson, Stephen Pederson, Michael Lardelli

bioRxiv 262162; doi: https://doi.org/10.1101/262162

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Conservative method for attenuation of Vertical Electrooculogram based on local suppression of artifact templates from ongoing EEG
Dimitri M. Abramov, Carlos Alberto Mourão Jr., Paulo Ricardo Galhanone, Vladimir V. Lazarev

bioRxiv 268763; doi: https://doi.org/10.1101/268763

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Comparative assessment of strategies to identify similar ligand-binding pockets in proteins
Rajiv Gandhi Govindaraj, Michal Brylinski

bioRxiv 268565; doi: https://doi.org/10.1101/268565

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Dynamic Network Analysis of the 4D Nucleome
Sijia Liu, Pin-Yu Chen, Alfred Hero, Indika Rajapakse

bioRxiv 268318; doi: https://doi.org/10.1101/268318

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psichomics: graphical application for alternative splicing quantification and analysis
Nuno Saraiva-Agostinho, Nuno L. Barbosa-Morais

bioRxiv 261180; doi: https://doi.org/10.1101/261180

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Matching drug transcriptional signatures to rare losses disrupting synaptic gene networks identifies known and novel candidate drugs for schizophrenia
Daniele Merico, Xiao Wang, Ryan K. C. Yuen, Stephen W. Scherer, Anne S. Bassett

bioRxiv 268094; doi: https://doi.org/10.1101/268094

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Bioinformatics

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