Bioinformatics

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
Jennifer M Shelton, Michelle C Coleman, Nic Herndon, Nanyan Lu, Ernest T Lam, Thomas Anantharaman, Palak Sheth, Susan J Brown

bioRxiv 020966; doi: https://doi.org/10.1101/020966

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WMP: A novel comprehensive wheat miRNA database, including related bioinformatics software
Mohamed Amine Remita, Etienne Lord, Zahra Agharbaoui, Mickael Leclercq, Mohamed A. Badawi, Vladirmir Makarenkov, Fathey Sarhan, Abdoulaye Baniré Diallo

bioRxiv 024893; doi: https://doi.org/10.1101/024893 Confirmatory Results

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Genome ARTIST: a robust, high-accuracy aligner tool for mapping transposon insertions and self-insertions
Alexandru Al. Ecovoiu, Iulian Constantin Ghionoiu, Andrei Mihai Ciuca, Attila Cristian Ratiu

bioRxiv 024976; doi: https://doi.org/10.1101/024976

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Data science identifies novel drug interactions that prolong the QT interval
Tal Lorberbaum, Kevin J. Sampson, Raymond L. Woosley, Robert S. Kass, Nicholas P. Tatonetti

bioRxiv 024745; doi: https://doi.org/10.1101/024745

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Cookiecutter: a tool for kmer-based read filtering and extraction
Ekaterina Starostina, Gaik Tamazian, Pavel Dobrynin, Stephen O’Brien, Aleksey Komissarov

bioRxiv 024679; doi: https://doi.org/10.1101/024679

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Fuzzy-FishNet: A highly precise distribution-free network approach for feature selection in clinical proteomics
Wilson Wen Bin Goh

bioRxiv 024430; doi: https://doi.org/10.1101/024430

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Rail-RNA: Scalable analysis of RNA-seq splicing and coverage
Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead

bioRxiv 019067; doi: https://doi.org/10.1101/019067

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Manta: Rapid detection of structural variants and indels for clinical sequencing applications
Xiaoyu Chen, Ole Schulz-Trieglaff, Richard Shaw, Bret Barnes, Felix Schlesinger, Anthony J. Cox, Semyon Kruglyak, Christopher T. Saunders

bioRxiv 024232; doi: https://doi.org/10.1101/024232

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Fast and efficient QTL mapper for thousands of molecular phenotypes
Halit Ongen, Alfonso Buil, Andrew Anand Brown, Emmanouil T. Dermitzakis, Olivier Delaneau

bioRxiv 022301; doi: https://doi.org/10.1101/022301

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DADA2: High resolution sample inference from amplicon data
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo Johnson, Susan P Holmes

bioRxiv 024034; doi: https://doi.org/10.1101/024034

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Bioinformatics

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