Bioinformatics

DeepBound: Accurate Identification of Transcript Boundaries via Deep Convolutional Neural Fields
Mingfu Shao, Jianzhu Ma, Sheng Wang

bioRxiv 125229; doi: https://doi.org/10.1101/125229

Add to Selected Citations
RNA-seq 2G: online analysis of differential gene expression with comprehensive options of statistical methods
Zhe Zhang, Yuanchao Zhang, Perry Evans, Asif Chinwalla, Deanne Taylor

bioRxiv 122747; doi: https://doi.org/10.1101/122747

Add to Selected Citations
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
Martin Hunt, Alison E. Mather, Leonor Sánchez-Busó, Andrew J. Page, Julian Parkhill, Jacqueline A. Keane, Simon R. Harris

bioRxiv 118000; doi: https://doi.org/10.1101/118000

Add to Selected Citations
Cycledash: a web application for the interactive analysis and exploration of variants
Isaac Hodes, Dan Vanderkam, Tavi Nathanson, B. Arman Aksoy, Jaclyn Perrone, Jeff Hammerbacher

bioRxiv 125153; doi: https://doi.org/10.1101/125153

Add to Selected Citations
Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies
Jie Liu, John T. Halloran, Jeffrey A. Bilmes, Riza M. Daza, Choli Lee, Elisabeth M. Mahen, Donna Prunkard, Chaozhong Song, Sibel Blau, Michael O. Dorschner, Vijayakrishna K. Gadi, Jay Shendure, C. Anthony Blau, William S. Noble

bioRxiv 125138; doi: https://doi.org/10.1101/125138

Add to Selected Citations
The value of prior knowledge in machine learning of complex network systems
David Craft, Dana Ferranti, David Krane

bioRxiv 094151; doi: https://doi.org/10.1101/094151

Add to Selected Citations
Unbiased estimate of synonymous and non-synonymous substitution rates with non-stationary base composition
Laurent Guéguen, Laurent Duret

bioRxiv 124925; doi: https://doi.org/10.1101/124925

Add to Selected Citations
SOMSC: Self-Organization-Map for High-Dimensional Single-Cell Data of Cellular States and Their Transitions
Tao Peng, Qing Nie

bioRxiv 124735; doi: https://doi.org/10.1101/124735

Add to Selected Citations
Literature Evidence in Open Targets – a target validation platform
Şenay Kafkas, Ian Dunham, Johanna McEntyre

bioRxiv 124719; doi: https://doi.org/10.1101/124719

Add to Selected Citations
MMTF - an efficient file format for the transmission, visualization, and analysis of macromolecular structures
Anthony R. Bradley, Alexander S. Rose, Antonín Pavelka, Yana Valasatava, Jose M. Duarte, Andreas Prlić, Peter W. Rose

bioRxiv 122689; doi: https://doi.org/10.1101/122689

Add to Selected Citations

Bioinformatics

Pages