Bioinformatics

ROSE: a deep learning based framework for predicting ribosome stalling
Sai Zhang, Hailin Hu, Jingtian Zhou, Xuan He, Tao Jiang, Jianyang Zeng

bioRxiv 067108; doi: https://doi.org/10.1101/067108

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Automatic Tracing of Ultra-Volume of Neuronal Images
Hanchuan Peng, Zhi Zhou, Erik Meijering, Ting Zhao, Giorgio A. Ascoli, Michael Hawrylycz

bioRxiv 087726; doi: https://doi.org/10.1101/087726

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WhatsHap: fast and accurate read-based phasing
Marcel Martin, Murray Patterson, Shilpa Garg, Sarah O Fischer, Nadia Pisanti, Gunnar W Klau, Alexander Schöenhuth, Tobias Marschall

bioRxiv 085050; doi: https://doi.org/10.1101/085050

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MARS: Motif Assessment and Ranking Suite for transcription factor binding motifs
Caleb Kipkurui Kibet, Philip Machanick

bioRxiv 065615; doi: https://doi.org/10.1101/065615

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Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotation
Magali Ruffier, Andreas Kähäri, Monika Komorowska, Stephen Keenan, Matthew R. Laird, Ian Longden, Glenn Proctor, Searle Steve, Daniel Staines, Kieron Taylor, Alessandro Vullo, Andrew Yates, Daniel Zerbino, Paul Flicek

bioRxiv 087239; doi: https://doi.org/10.1101/087239

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lncRNA-screen: an interactive platform for computationally screening long non-coding RNAs in large genomics datasets
Yixiao Gong, Hsuan-Ting Huang, Yu Liang, Thomas Trimarchi, Iannis Aifantis, Aristotelis Tsirigos

bioRxiv 087080; doi: https://doi.org/10.1101/087080

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A Deep Boosting Based Approach for Capturing the Sequence Binding Preferences of RNA-Binding Proteins from High-Throughput CLIP-Seq Data
Shuya Li, Fanghong Dong, Yuexin Wu, Sai Zhang, Chen Zhang, Xiao Liu, Tao Jiang, Jianyang Zeng

bioRxiv 086421; doi: https://doi.org/10.1101/086421 Confirmatory Results

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EthSEQ: ethnicity annotation from whole exome sequencing data
Alessandro Romanel, Tuo Zhang, Olivier Elemento, Francesca Demichelis

bioRxiv 085837; doi: https://doi.org/10.1101/085837

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Comparison of Clustering Methods for High-Dimensional Single-Cell Flow and Mass Cytometry Data
Lukas M. Weber, Mark D. Robinson

bioRxiv 047613; doi: https://doi.org/10.1101/047613

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Establishing wonder oil, Solanesol, as a novel inhibitor for Focal Adhesive Kinase by in silico strategies
Betty Daneial, Devashish Das, V. J. Jacob Paul, R. Guruprasad

bioRxiv 086660; doi: https://doi.org/10.1101/086660 Confirmatory Results

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Bioinformatics

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