Bioinformatics

OncoScape: Exploring the cancer aberration landscape by genomic data fusion
Andreas Schlicker, Magali Michaut, Rubayte Rahman, Lodewyk FA Wessels

bioRxiv 041962; doi: https://doi.org/10.1101/041962

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Vcfanno: fast, flexible annotation of genetic variants
Brent S. Pedersen, Ryan M. Layer, Aaron R. Quinlan

bioRxiv 041863; doi: https://doi.org/10.1101/041863

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Diffusion pseudotime robustly reconstructs lineage branching
Laleh Haghverdi, Maren Büttner, F. Alexander Wolf, Florian Buettner, Fabian J. Theis

bioRxiv 041384; doi: https://doi.org/10.1101/041384

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SignaFish: a zebrafish-specific signaling pathway resource
Kitti Csályi, Dávid Fazekas, Tamás Kadlecsik, Dénes Türei, Leila Gul, Balázs Horváth, Dezső Módos, Amanda Demeter, Nóra Pápai, Katalin Lenti, Péter Csermely, Tibor Vellai, Tamás Korcsmáros, Máté Varga

bioRxiv 041822; doi: https://doi.org/10.1101/041822

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Assessment of Circulating Copy Number Variant Detection for Cancer Screening
Bhuvan Molparia, Eshaan Nichani, Ali Torkamani

bioRxiv 041848; doi: https://doi.org/10.1101/041848

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An alternative class of targets for microRNAs containing CG dinucleotide
Zheng Yan, Bin Zhang, Haiyang Hu, Gangcai Xie, Song Guo, Philipp Khaitovich, Yi-Ping Phoebe Chen

bioRxiv 026708; doi: https://doi.org/10.1101/026708

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Genome-Wide Prediction of cis-Regulatory Regions Using Supervised Deep Learning Methods
Yifeng Li, Wenqiang Shi, Wyeth W. Wasserman

bioRxiv 041616; doi: https://doi.org/10.1101/041616

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Does the choice of nucleotide substitution models matter topologically?
Michael Hoff, Stefan Orf, Benedikt Riehm, Diego Darriba, Alexandros Stamatakis

bioRxiv 041566; doi: https://doi.org/10.1101/041566 Confirmatory Results

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VcfR: a package to manipulate and visualize VCF format data in R
Brian J. Knaus, Niklaus J. Grünwald

bioRxiv 041277; doi: https://doi.org/10.1101/041277

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How reliable are ligand-centric methods for Target Fishing?
Antonio Peón, Cuong C. Dang, Pedro J. Ballester

bioRxiv 032946; doi: https://doi.org/10.1101/032946

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Bioinformatics

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