Bioinformatics

Predicting protein thermal stability changes upon point mutations using statistical potentials: Introducing HoTMuSiC
Fabrizio Pucci, Raphael Bourgeas, Marianne Rooman

bioRxiv 038554; doi: https://doi.org/10.1101/038554

Add to Selected Citations
Application of new informatics tools for identifying allosteric lead ligands of the c-Src kinase
Lili X. Peng, Morgan Lawrenz, Diwakar Shukla, Grace W. Tang, Vijay S. Pande, Russ B. Altman

bioRxiv 038323; doi: https://doi.org/10.1101/038323

Add to Selected Citations
MetaFlow: Metagenomic profiling based on whole-genome coverage analysis with min-cost flows
Ahmed Sobih, Alexandru I. Tomescu, Veli Mäkinen

bioRxiv 038208; doi: https://doi.org/10.1101/038208

Add to Selected Citations
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris

bioRxiv 038190; doi: https://doi.org/10.1101/038190 Confirmatory Results

Add to Selected Citations
Seqping: Gene Prediction Pipeline for Plant Genomes using Self-Trained Gene Models and Transcriptomic Data
Kuang-Lim Chan, Rozana Rosli, Tatiana Tatarinova, Michael Hogan, Mohd Firdaus-Raih, Eng-Ti Leslie Low

bioRxiv 038018; doi: https://doi.org/10.1101/038018

Add to Selected Citations
Principal component of explained variance: an efficient and optimal data dimension reduction framework for association studies
Maxime Turgeon, Karim Oualkacha, Antonio Ciampi, Golsa Dehghan, Brent W. Zanke, Andréa L. Benedet, Pedro Rosa-Neto, Celia MT. Greenwood, Aurélie Labbe, for the Alzheimer’s Disease Neuroimaging Initiative

bioRxiv 036566; doi: https://doi.org/10.1101/036566

Add to Selected Citations
ME-plot: A QC package for bisulfite sequencing reads
Bong-Hyun Kim

bioRxiv 033696; doi: https://doi.org/10.1101/033696

Add to Selected Citations
pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data
Dan Vanderkam, B. Arman Aksoy, Isaac Hodes, Jaclyn Perrone, Jeff Hammerbacher

bioRxiv 036962; doi: https://doi.org/10.1101/036962

Add to Selected Citations
The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets
Jason W. Sahl, Darrin Lemmer, Jason Travis, James M. Schupp, John D. Gillece, Maliha Aziz, Elizabeth M. Driebe, Kevin Drees, Nathan Hicks, Charles H.D. Williamson, Crystal Hepp, David Smith, Chandler Roe, David M. Engelthaler, David M. Wagner, Paul Keim

bioRxiv 037267; doi: https://doi.org/10.1101/037267

Add to Selected Citations
Reference-free deconvolution of DNA methylation data and mediation by cell composition effects
E. Andres Houseman, Molly L. Kile, David C. Christiani, Tan A. Ince, Karl T. Kelsey, Carmen J. Marsit

bioRxiv 037671; doi: https://doi.org/10.1101/037671

Add to Selected Citations

Bioinformatics

Pages