Bioinformatics

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Numerical Simulation of population development using the function of the age distribution of birthrate
Alexandr N. Tetearing

bioRxiv 031047; doi: https://doi.org/10.1101/031047 Confirmatory Results

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Fast principal components analysis reveals convergent evolution of ADH1B gene in Europe and East Asia
Kevin J. Galinsky, Gaurav Bhatia, Po-Ru Loh, Stoyan Georgiev, Sayan Mukherjee, Nick J. Patterson, Alkes L. Price

bioRxiv 018143; doi: https://doi.org/10.1101/018143

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chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts
Birte Kehr, Páll Melsted

bioRxiv 030825; doi: https://doi.org/10.1101/030825

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ADAGE analysis of publicly available gene expression data collections illuminates Pseudomonas aeruginosa-host interactions
Jie Tan, John H. Hammond, Deborah A. Hogan, Casey S. Greene

bioRxiv 030650; doi: https://doi.org/10.1101/030650

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Evaluating disease similarity using latent Dirichlet allocation
James Frick, Rajarshi Guha, Tyler Peryea, Noel T. Southall

bioRxiv 030593; doi: https://doi.org/10.1101/030593

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GenOO: A Modern Perl Framework for High Throughput Sequencing analysis
Manolis Maragkakis, Panagiotis Alexiou, Zissimos Mourelatos

bioRxiv 019265; doi: https://doi.org/10.1101/019265

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repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data
Yuval Elhanati, Quentin Marcou, Thierry Mora, Aleksandra M. Walczak

bioRxiv 030403; doi: https://doi.org/10.1101/030403

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DBSIM: A Platform of Simulation Resources for Genetic Epidemiology Studies
Po-Ju Yao, Ren-Hua Chung

bioRxiv 030353; doi: https://doi.org/10.1101/030353

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PHYLUCE is a software package for the analysis of conserved genomic loci
Brant C. Faircloth

bioRxiv 027904; doi: https://doi.org/10.1101/027904

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Discrete Distributional Differential Expression (D³E) - A Tool for Gene Expression Analysis of Single-cell RNA-seq Data
Mihails Delmans, Martin Hemberg

bioRxiv 020735; doi: https://doi.org/10.1101/020735

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