Bioinformatics

MetaR: simple, high-level languages for data analysis with the R ecosystem
Fabien Campagne, William ER Digan, Manuele Simi

bioRxiv 030254; doi: https://doi.org/10.1101/030254

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mixMC: a multivariate statistical framework to gain insight into Microbial Communities
Kim-Anh Lê Cao, Mary-Ellen Costello, Vanessa Anne Lakis, François Bartolo, Xin-Yi Chua, Rémi Brazeilles, Pascale Rondeau

bioRxiv 044206; doi: https://doi.org/10.1101/044206

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iFORM: incorporating Find Occurrence of Regulatory Motifs
Chao Ren, Hebing Chen, Feng Liu, Hao Li, Xiaochen Bo, Wenjie Shu

bioRxiv 044214; doi: https://doi.org/10.1101/044214

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Strawberry: fast and accurate genome-guided transcript reconstruction and quantification from RNA-seq
Ruolin Liu, Julie A. Dickerson

bioRxiv 043802; doi: https://doi.org/10.1101/043802

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Hierarchical Association Coefficient Algorithm
Bongsong Kim

bioRxiv 043844; doi: https://doi.org/10.1101/043844

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Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations
Kassian Kobert, Alexandros Stamatakis, Tomáš Flouri

bioRxiv 035873; doi: https://doi.org/10.1101/035873

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Synlet: an R package for systemically analyzing synthetic lethal RNA interference screen data
Chunxuan Shao, Frank Westermann, Thomas Höfer

bioRxiv 043570; doi: https://doi.org/10.1101/043570

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RNA-seq based analysis of population structure within the maize inbred B73
Zhikai Liang, James C. Schnable

bioRxiv 043513; doi: https://doi.org/10.1101/043513

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A little walk from physical to biological complexity: protein folding and stability
Fabrizio Pucci, Marianne Rooman

bioRxiv 043737; doi: https://doi.org/10.1101/043737 Confirmatory Results

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Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach
Xinyan Zhang, Yan Li, Tomi Akinyemiju, Akinyemi I. Ojesina, Phillip Buckhaults, Nianjun Liu, Bo Xu, Nengjun Yi

bioRxiv 043661; doi: https://doi.org/10.1101/043661

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Bioinformatics

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