Bioinformatics

Benchmarking Statistical Multiple Sequence Alignment
Michael G Nute, Ehsan Saleh, Tandy Warnow

bioRxiv 304659; doi: https://doi.org/10.1101/304659 New Results
Gaining insights from RNA-Seq data using iDEP
Steven Xijin Ge, Eun Wo Son

bioRxiv 148411; doi: https://doi.org/10.1101/148411 New Results
Container-based bioinformatics with Pachyderm
Jon Ander Novella, Payam Emami Khoonsari, Stephanie Herman, Daniel Whitenack, Marco Capuccini, Joachim Burman, Kim Kultima, Ola Spjuth

bioRxiv 299032; doi: https://doi.org/10.1101/299032 New Results
RefSeq database growth influences the accuracy of k-mer-based species identification
Daniel J Nasko, Sergey Koren, Adam M Phillippy, Todd J Treangen

bioRxiv 304972; doi: https://doi.org/10.1101/304972 New Results
Recentrifuge: robust comparative analysis and contamination removal for metagenomic data
Jose Manuel Martí

bioRxiv 190934; doi: https://doi.org/10.1101/190934 New Results
Linking drug target and pathway activation for effective therapy using multi-task learning
Mi Yang, Jaak Simm, Chi Chung Lam, Pooya Zakeri, Gerard J. P. van Westen, Yves Moreau, Julio Saez-Rodriguez

bioRxiv 225573; doi: https://doi.org/10.1101/225573 New Results
Compendium of Synovial Signatures Identifies Pathologic Characteristics for Predicting Treatment Response in Rheumatoid Arthritis
Ki-Jo Kim, Minseung Kim, Ilias Tagkopoulos

bioRxiv 279786; doi: https://doi.org/10.1101/279786 New Results
ACDtool: a web-server extending the original Audic-Claverie statistical test to the comparison of large data sets of counts.
Jean-Michel Claverie, Thi Ngan Ta

bioRxiv 304568; doi: https://doi.org/10.1101/304568 New Results
Locoregional Radiogenomic Models Capture Gene Expression Heterogeneity in Glioblastoma
Adrien Depeursinge, Tunde Szilagyi, Yan Liu, Kazmer Kovacs, Reena Thomas, Kristen Yeom, Nancy Fischbein, Daniel Rubin, Michael Iv, Olivier Gevaert

bioRxiv 304105; doi: https://doi.org/10.1101/304105 New Results
Identification of co-evolving temporal networks
Rasha Elhesha, Aisharjya Sarkar, Christina Boucher, Tamer Kahveci

bioRxiv 303974; doi: https://doi.org/10.1101/303974 New Results

Bioinformatics

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