Bioinformatics

EnTAP: Bringing Faster and Smarter Functional Annotation to Non-Model Eukaryotic Transcriptomes
Alexander J. Hart, Samuel Ginzburg, Muyang (Sam) Xu, Cera R. Fisher, Nasim Rahmatpour, Jeffry B. Mitton, Robin Paul, Jill L. Wegrzyn

bioRxiv 307868; doi: https://doi.org/10.1101/307868 New Results

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FINET: Fast Inferring NETwork
Anyou Wang, Rong Hai

bioRxiv 733683; doi: https://doi.org/10.1101/733683 New Results

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The Gene Expression Deconvolution Interactive Tool (GEDIT): Accurate Cell Type Quantification from Gene Expression Data
Brian Nadel, David Lopez, Dennis J. Montoya, Hannah Waddel, Misha M. Khan, Matteo Pellegrini

bioRxiv 728493; doi: https://doi.org/10.1101/728493 New Results

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Benchmarking machine learning models for the analysis of genetic data using FRESA.CAD Binary Classification Benchmarking
Javier de Velasco Oriol, Antonio Martinez-Torteya, Victor Trevino, Israel Alanis, Edgar E. Vallejo, Jose Gerardo Tamez-Pena

bioRxiv 733675; doi: https://doi.org/10.1101/733675 New Results

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Pathway and network embedding methods for prioritizing psychiatric drugs
Yash Pershad, Margaret Guo, Russ B. Altman

bioRxiv 728055; doi: https://doi.org/10.1101/728055 New Results

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Divergence: An R Package for Divergence Analysis of Omics Data
Wikum Dinalankara, Qian Ke, Donald Geman, Luigi Marchionni

bioRxiv 720391; doi: https://doi.org/10.1101/720391 New Results

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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0
Eric W. Deutsch, Lydie Lane, Christopher M. Overall, Nuno Bandeira, Mark S. Baker, Charles Pineau, Robert L. Moritz, Fernando Corrales, Sandra Orchard, Jennifer E. Van Eyk, Young-Ki Paik, Susan T. Weintraub, Yves Vandenbrouck, Gilbert S. Omenn

bioRxiv 733576; doi: https://doi.org/10.1101/733576 New Results

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Integrating untargeted metabolomics, genetically informed causal inference, and pathway enrichment to define the obesity metabolome
Yu-Han H. Hsu, Christina M. Astley, Joanne B. Cole, Sailaja Vedantam, Josep M. Mercader, Andres Metspalu, Krista Fischer, Kristen Fortney, Eric K. Morgen, Clicerio Gonzalez, Maria E. Gonzalez, Tonu Esko, Joel N. Hirschhorn

bioRxiv 734707; doi: https://doi.org/10.1101/734707 New Results

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Geostatistical visualization of ecological interactions in tumors
Hunter Boyce, Parag Mallick

bioRxiv 729368; doi: https://doi.org/10.1101/729368 New Results

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quasitools: A Collection of Tools for Viral Quasispecies Analysis
Eric Marinier, Eric Enns, Camy Tran, Matthew Fogel, Cole Peters, Ahmed Kidwai, Hezhao Ji, Gary Van Domselaar

bioRxiv 733238; doi: https://doi.org/10.1101/733238 New Results

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Bioinformatics

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