Bioinformatics

Deep Genomic Signature for early metastasis prediction in prostate cancer
Hossein Sharifi-Noghabi, Yang Liu, Nicholas Erho, Raunak Shrestha, Mohammed Alshalalfa, Elai Davicioni, Colin C Collins, Martin Ester

bioRxiv 276055; doi: https://doi.org/10.1101/276055 New Results
Gaussian Process Based Heteroscedastic Noise Modeling for Tumor Mutation Burden Prediction from Whole Slide Images
Sunho Park, Hongming Xu, Tae Hyun Hwang

bioRxiv 554261; doi: https://doi.org/10.1101/554261 New Results
The Bellerophon pipeline, improving de novo transcriptomes and removing chimeras
Jesse Kerkvliet, Arthur de Fouchier, Michiel van Wijk, Astrid T. Groot

bioRxiv 495754; doi: https://doi.org/10.1101/495754 New Results
synder: inferring genomic orthologs from synteny maps
Zebulun Arendsee, Andrew Wilkey, Urminder Singh, Jing Li, Manhoi Hur, Eve Wurtele

bioRxiv 554501; doi: https://doi.org/10.1101/554501 New Results
EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy
Katarzyna Murat, Bjorn Gruning, Paulina Wiktoria Poterlowicz, Gillian Westgate, Desmond John Tobin, Krzysztof Poterlowicz

bioRxiv 553784; doi: https://doi.org/10.1101/553784 New Results
dbMTS: a comprehensive database of putative human microRNA target site SNVs and their functional predictions
Chang Li, Michael D. Swartz, Bing Yu, Xiaoming Liu

bioRxiv 554485; doi: https://doi.org/10.1101/554485 New Results
Objective Assessment of Beat Quality in Transcranial Doppler Measurement of Blood Flow Velocity in Cerebral Arteries
Kian Jalaleddini, Nicolas Canac, Samuel G. Thorpe, Benjamin Delay, Amber Y. Dorn, Fabien Scalzo, Corey M. Thibeault, Seth Wilk, Robert B. Hamilton

bioRxiv 554568; doi: https://doi.org/10.1101/554568 New Results
Comparing 3D genome organization in multiple species using Phylo-HMRF
Yang Yang, Yang Zhang, Bing Ren, Jesse Dixon, Jian Ma

bioRxiv 552505; doi: https://doi.org/10.1101/552505 New Results
fastq-pair: efficient synchronization of paired-end fastq files
Robert Edwards, John A Edwards

bioRxiv 552885; doi: https://doi.org/10.1101/552885 New Results
Using transfer learning on whole slide images to predict tumor mutational burden in bladder cancer patients
Hongming Xu, Sunho Park, Sung Hak Lee, Tae Hyun Hwang

bioRxiv 554527; doi: https://doi.org/10.1101/554527 New Results

Bioinformatics

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