Bioinformatics

Molecular Profiles of Matched Primary and Metastatic Tumor Samples Support an Evolutionary Model of Breast Cancer
Runpu Chen, Steve Goodison, Yijun Sun

bioRxiv 667303; doi: https://doi.org/10.1101/667303 New Results
Single Cell Viewer (SCV): An interactive visualization data portal for single cell RNA sequence data
Shuoguo Wang, Constance Brett, Mohan Bolisetty, Ryan Golhar, Isaac Neuhaus, Kandasamy Ravi

bioRxiv 664789; doi: https://doi.org/10.1101/664789 New Results
Shiny-SoSV: A web app for interactive evaluation of somatic structural variant calls
Tingting Gong, Vanessa M Hayes, Eva KF Chan

bioRxiv 668723; doi: https://doi.org/10.1101/668723 New Results
The transcription factor basal regulatory network of Homo sapiens and Saccharomyces cerevisiae: uncovering the relationship between topology and phenotype
JL Hernández-Domínguez, A. Brass, EM Navarro-López

bioRxiv 669697; doi: https://doi.org/10.1101/669697 New Results
PRODIGY: personalized prioritization of driver genes
Gal Dinstag, Ron Shamir

bioRxiv 456723; doi: https://doi.org/10.1101/456723 New Results
Cross-linked RNA Secondary Structure Analysis using Network Techniques
Irena Fischer-Hwang, Zhipeng Lu, James Zou, Tsachy Weissman

bioRxiv 668491; doi: https://doi.org/10.1101/668491 New Results
genomalicious: serving up a smorgasbord of R functions for population genomic analyses
Joshua A. Thia, Cynthia Riginos

bioRxiv 667337; doi: https://doi.org/10.1101/667337 New Results
Genotype-free demultiplexing of pooled single-cell RNA-Seq
Jun Xu, Caitlin Falconer, Quan Nguyen, Joanna Crawford, Brett D. McKinnon, Sally Mortlock, Anne Senabouth, Stacey Andersen, Grant W. Montgomery, Joseph Powell, Lachlan Coin

bioRxiv 570614; doi: https://doi.org/10.1101/570614 New Results
deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index
Bo Liu, Yadong Liu, Junyi Li, Hongzhe Guo, Tianyi Zang, Yadong Wang

bioRxiv 612176; doi: https://doi.org/10.1101/612176 New Results
Computational Saturation Mutagenesis to predict structural consequences of systematic mutations on protein stability and rifampin interactions in the β subunit of RNA polymerase in Mycobacterium leprae
Sundeep Chaitanya Vedithi, Carlos H. M. Rodrigues, Stephanie Portelli, Marcin J. Skwark, Madhusmita Das, David B. Ascher, Tom L Blundell, Sony Malhotra

bioRxiv 654095; doi: https://doi.org/10.1101/654095 New Results

Bioinformatics

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