Bioinformatics

The Genetic Chain Rule for Probabilistic Kinship Estimation
Brian S Helfer, Philip Fremont-Smith, Darrell O Ricke

bioRxiv 202879; doi: https://doi.org/10.1101/202879 New Results
FACSanadu: Graphical user interface for rapid visualization and quantification of flow cytometry data
Thomas R. Bürglin, Johan Henriksson

bioRxiv 201897; doi: https://doi.org/10.1101/201897 New Results
HYPO: A database of hypothetical human proteins
Vijayaraghava Seshadri Sundararajan, Girik Malik, Johny Ijaq, Anuj Kumar, Partha Sarathi Das, Shidhi P R, Achuthsankar S Nair, Prashanth Suravajhala, Pawan Dhar

bioRxiv 202887; doi: https://doi.org/10.1101/202887 New Results
Detecting T cell receptor rearrangements in silico from non-targeted DNA-sequencing (WGS/WES)
Lara McGrath, Tristan Lubinski, J. Carl Barrett, Humphrey Gardner

bioRxiv 201947; doi: https://doi.org/10.1101/201947 New Results
A Deep Recurrent Neural Network Discovers Complex Biological Rules to Decipher RNA Protein-Coding Potential
Steven T Hill, Rachael C Kuintzle, Amy Teegarden, Erich Merrill III, Padideh Danaee, David A Hendrix

bioRxiv 200758; doi: https://doi.org/10.1101/200758 New Results
Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection
Heeju Noh, Jason Edward Shoemaker, Rudiyanto Gunawan

bioRxiv 175364; doi: https://doi.org/10.1101/175364 New Results
SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution
Sarah Bastkowski, Daniel Mapleson, Andreas Spillner, Taoyang Wu, Monika Balvociute, Vincent Moulton

bioRxiv 169177; doi: https://doi.org/10.1101/169177 New Results
Identifying accurate metagenome and amplicon software via a meta-analysis of benchmarking studies
Paul P. Gardner, Renee J. Watson, Xochitl C. Morgan, Jenny L. Draper, Robert D. Finn, Sergio E. Morales, Matthew B. Stott

bioRxiv 202077; doi: https://doi.org/10.1101/202077 Confirmatory Results
The optimization of mRNA expression level by its intrinsic properties — insights from codon usage pattern and structural stability of mRNA
Manish Prakash Victor, Debarun Acharya, Tina Begum, Tapash Chandra Ghosh

bioRxiv 202200; doi: https://doi.org/10.1101/202200 New Results
Revising transcriptome assemblies with phylogenetic information in Agalma1.0
August Guang, Mark Howison, Felipe Zapata, Charles E. Lawrence, Casey Dunn

bioRxiv 202416; doi: https://doi.org/10.1101/202416 New Results

Bioinformatics

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