Bioinformatics

Transfer learning from simulations improves the classification of OCT images of glandular epithelia
Sassan Ostvar, Han Troung, Elisabeth R Silver, Charles J Lightdale, Chin Hur, Nicholas P Tatonetti

bioRxiv 2020.10.26.355180; doi: https://doi.org/10.1101/2020.10.26.355180 New Results

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Systematic GWAS-assessment of disease modules reveals a multi-omic MS module strongly associated with risk factors
Tejaswi V.S. Badam, Hendrik A. de Weerd, David Martínez-Enguita, Tomas Olsson, Lars Alfredsson, Ingrid Kockum, Maja Jagodic, Zelmina Lubovac-Pilav, Mika Gustafsson

bioRxiv 2020.10.26.351783; doi: https://doi.org/10.1101/2020.10.26.351783 New Results

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A Biological Inventory of Prophages in A. baumannii Genomes Reveal Distinct Distributions in Classes, Length and Genomic Positions
Belinda Loh, Jiayuan Chen, Prasanth Manohar, Yunsong Yu, Xiaoting Hua, Sebastian Leptihn

bioRxiv 2020.10.26.355222; doi: https://doi.org/10.1101/2020.10.26.355222 New Results

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Atomic-level evolutionary information improves protein-protein interface scoring
Chloé Quignot, Pierre Granger, Pablo Chacón, Raphael Guerois, Jessica Andreani

bioRxiv 2020.10.26.355073; doi: https://doi.org/10.1101/2020.10.26.355073 New Results

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StartLink+: Prediction of Gene Starts in Prokaryotic Genomes by an Algorithm Integrating Independent Sources of Evidence
Karl Gemayel, Alexandre Lomsadze, Mark Borodovsky

bioRxiv 2020.10.25.352625; doi: https://doi.org/10.1101/2020.10.25.352625 New Results

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Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome k-mer Sets
Min-Hak Choi, Jang-il Sohn, Dohun Yi, A Vipin Menon, Yeon Jeong Kim, Sungkyu Kyoung, Seung-Ho Shin, Byunggook Na, Je-Gun Joung, Sungro Yoon, Youngil Koh, Daehyun Baek, Tae-Min Kim, Jin-Wu Nam

bioRxiv 2020.10.25.354456; doi: https://doi.org/10.1101/2020.10.25.354456 New Results

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ShinyCell: Simple and sharable visualisation of single-cell gene expression data
John F. Ouyang, Uma S. Kamaraj, Elaine Y. Cao, Owen J. L. Rackham

bioRxiv 2020.10.25.354100; doi: https://doi.org/10.1101/2020.10.25.354100 New Results

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FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data
Cheynna Crowley, Yuchen Yang, Yunjiang Qiu, Benxia Hu, Jakub Lipiński, Dariusz Plewczynski, Hyejung Won, Bing Ren, Ming Hu, Yun Li

bioRxiv 619288; doi: https://doi.org/10.1101/619288 New Results

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Functional Organization of the Maternal and Paternal Human 4D Nucleome
Stephen M Lindsly, Wenlong Jia, Haiming Chen, Sijia Liu, Scott Ronquist, Can Chen, Xingzhao Wen, Gabrielle Dotson, Charles Ryan, Gilbert S Omenn, Shuai Cheng Li, Max Wicha, Alnawaz Rehemtulla, Lindsey Muir, Indika Rajapakse

bioRxiv 2020.03.15.992164; doi: https://doi.org/10.1101/2020.03.15.992164 New Results

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Conjugate graph resolves the complex structures at virus integration loci with NGS data
Wenlong Jia, Chang Xu, Shuai Cheng Li

bioRxiv 2020.05.17.100578; doi: https://doi.org/10.1101/2020.05.17.100578 New Results

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Bioinformatics

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