Bioinformatics

Predicting peptide presentation by major histocompatibility complex class I using one million peptides
Kevin Michael Boehm, Bhavneet Bhinder, Vijay Joseph Raja, Noah Dephoure, Olivier Elemento

bioRxiv 349282; doi: https://doi.org/10.1101/349282 New Results
AccuNGS: a sequencing protocol for detection of ultra-rare variants reveals extensive variation in HIV during first days of infection
Maoz Gelbart, Sheri Harari, Ya'ara Ben-Ari, Talia Kustin, Moran Meir, Danielle Miller, Orna Mor, Adi Stern

bioRxiv 349498; doi: https://doi.org/10.1101/349498 New Results
Characterization and automatic classification of preterm and term uterine records
Franc Jager, Sonja Libensek, Ksenija Gersak

bioRxiv 349266; doi: https://doi.org/10.1101/349266 New Results
Performance benchmarking of GATK3.8 and GATK4
Jacob R Heldenbrand, Saurabh Baheti, Matthew A Bockol, Travis M Drucker, Steven N Hart, Matthew E Hudson, Ravishankar K Iyer, Michael T Kalmbach, Eric W Klee, Eric D Wieben, Mathieu Wiepert, Derek E Wildman, Liudmila S Mainzer

bioRxiv 348565; doi: https://doi.org/10.1101/348565 New Results
GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics
Teppei Shimamura, Yusuke Matsui, Taisuke Kajino, Satoshi Ito, Takashi Takahashi, Satoru Miyano

bioRxiv 349928; doi: https://doi.org/10.1101/349928 New Results
Z-score to evaluate the absolute quality of macromolecular models based on SAXS data
Dmytro Guzenko, Sergei V Strelkov

bioRxiv 349704; doi: https://doi.org/10.1101/349704 New Results
diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering
Lukas M Weber, Malgorzata Nowicka, Charlotte Soneson, Mark D Robinson

bioRxiv 349738; doi: https://doi.org/10.1101/349738 New Results
Robust Design for Coalescent Model Inference
Kris V Parag, Oliver G Pybus

bioRxiv 317438; doi: https://doi.org/10.1101/317438 New Results
Benchmark and integration of resources for the estimation of human transcription factor activities
Luz Garcia-Alonso, Mahmoud M Ibrahim, Denes Turei, Julio Saez-Rodriguez

bioRxiv 337915; doi: https://doi.org/10.1101/337915 New Results
Identifying Antimicrobial Peptides using Word Embedding with Deep Recurrent Neural Networks
Md Nafiz Hamid, Iddo Friedberg

bioRxiv 255505; doi: https://doi.org/10.1101/255505 New Results

Bioinformatics

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