Bioinformatics

Reverse-Complement Equivariant Networks for DNA Sequences
Vincent Mallet, Jean-Philippe Vert

bioRxiv 2021.06.03.446953; doi: https://doi.org/10.1101/2021.06.03.446953 New Results

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KnowMore: an automated knowledge discovery tool for the FAIR SPARC datasets
Ryan Quey, Matthew A. Schiefer, Anmol Kiran, Bhavesh Patel

bioRxiv 2021.08.08.455581; doi: https://doi.org/10.1101/2021.08.08.455581 New Results

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Improving variant calling using population data and deep learning
Nae-Chyun Chen, Alexey Kolesnikov, Sidharth Goel, Taedong Yun, Pi-Chuan Chang, Andrew Carroll

bioRxiv 2021.01.06.425550; doi: https://doi.org/10.1101/2021.01.06.425550 New Results

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A curated collection of human vaccination response signatures
Kenneth C. Smith, Daniel G. Chawla, Bhavjinder K. Dhillon, Zhou Ji, Randi Vita, Eva C. van der Leest, Jing Yi (Jessica) Weng, Ernest Tang, Amani Abid, The Human Immunology Project Consortium (HIPC), Bjoern Peters, Robert E.W. Hancock, Aris Floratos, Steven H. Kleinstein

bioRxiv 2021.04.15.439017; doi: https://doi.org/10.1101/2021.04.15.439017 New Results

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A rigorous framework for detecting SARS-CoV-2 spike protein mutational ensemble from genomic and structural features
Saman Fatihi, Surabhi Rathore, Ankit K. Pathak, Deepanshi Gahlot, Mitali Mukerji, Nidhi Jatana, Lipi Thukral

bioRxiv 2021.02.17.431625; doi: https://doi.org/10.1101/2021.02.17.431625 New Results

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Underlying selection for the diversity of Spike protein sequences of SARS-CoV-2
Manisha Ghosh, Surajit Basak, Shanta Dutta

bioRxiv 2021.10.22.465411; doi: https://doi.org/10.1101/2021.10.22.465411 New Results

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Morphology and gene expression profiling provide complementary information for mapping cell state
Gregory P. Way, Ted Natoli, Adeniyi Adeboye, Lev Litichevskiy, Andrew Yang, Xiaodong Lu, Juan C. Caicedo, Beth A. Cimini, Kyle Karhohs, David J. Logan, Mohammad Rohban, Maria Kost-Alimova, Kate Hartland, Michael Bornholdt, Niranj Chandrasekaran, Marzieh Haghighi, Shantanu Singh, Aravind Subramanian, Anne E. Carpenter

bioRxiv 2021.10.21.465335; doi: https://doi.org/10.1101/2021.10.21.465335 New Results

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DenVar: Density-based Variation analysis of multiplex imaging data
Souvik Seal, Thao Vu, Tusharkanti Ghosh, Julia Wrobel, Debashis Ghosh

bioRxiv 2021.09.27.462056; doi: https://doi.org/10.1101/2021.09.27.462056 New Results

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The SAMBA tool uses long reads to improve the contiguity of genome assemblies
Aleksey V. Zimin, Steven L. Salzberg

bioRxiv 2021.10.21.465348; doi: https://doi.org/10.1101/2021.10.21.465348 New Results

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Mimicked synthetic ribosomal protein complex for benchmarking crosslinking mass spectrometry workflows
Manuel Matzinger, Adrian Vasiu, Mathias Madalinski, Florian Stanek, Karl Mechtler

bioRxiv 2021.10.21.465295; doi: https://doi.org/10.1101/2021.10.21.465295 New Results

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Bioinformatics

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