Bioinformatics

An integrated landscape of protein expression in human cancer
Andrew F. Jarnuczak, Hanna Najgebauer, Mitra Barzine, Deepti J. Kundu, Fatemeh Ghavidel, Yasset Perez-Riverol, Irene Papatheodorou, Alvis Brazma, Juan Antonio Vizcaíno

bioRxiv 665968; doi: https://doi.org/10.1101/665968 New Results
MetaPrism: A Toolkit for Joint Taxa/Gene Analysis of Metagenomic Sequencing Data
Jiwoong Kim, Shuang Jiang, Guanghua Xiao, Yang Xie, Andrew Koh, Xiaowei Zhan

bioRxiv 664748; doi: https://doi.org/10.1101/664748 New Results
A Generalized Similarity Metric for Predicting Peptide Binding Affinity
Jacob Rodriguez, Siddharth Rath, Jonathan Francis-Landau, Yekta Demirci, Burak Berk Ustundag, Mehmet Sarikaya

bioRxiv 654913; doi: https://doi.org/10.1101/654913 New Results
The landscape of chloroplast genome assembly tools
Jan A Freudenthal, Simon Pfaff, Niklas Terhoeven, Arthur Korte, Markus J Ankenbrand, Frank Förster

bioRxiv 665869; doi: https://doi.org/10.1101/665869 New Results
Predicting Synthetic Lethal Interactions using Heterogeneous Data Sources
Herty Liany, Anand Jeyasekharan, Vaibhav Rajan

bioRxiv 660092; doi: https://doi.org/10.1101/660092 New Results
Auto-regressive modeling and diagnostics for qPCR amplification
Benjamin Hsu, Valeriia Sherina, Matthew N. McCall

bioRxiv 665596; doi: https://doi.org/10.1101/665596 New Results
The advantages and disadvantages of short- and long-read metagenomics to infer bacterial and eukaryotic community composition
William S. Pearman, Nikki E. Freed, Olin K. Silander

bioRxiv 650788; doi: https://doi.org/10.1101/650788 New Results
CLIJ: Enabling GPU-accelerated image processing in Fiji
Robert Haase, Loic A. Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov, Uwe Schmidt, Martin Weigert, Nicola Maghelli, Pavel Tomancak, Florian Jug, Eugene W. Myers

bioRxiv 660704; doi: https://doi.org/10.1101/660704 New Results
Deep Learning Approach to Identifying Breast Cancer Subtypes Using High-Dimensional Genomic Data
Runpu Chen, Le Yang, Steve Goodison, Yijun Sun

bioRxiv 629865; doi: https://doi.org/10.1101/629865 New Results
Yet another de novo genome assembler
Robert Vaser, Mile Šikić

bioRxiv 656306; doi: https://doi.org/10.1101/656306 New Results

Bioinformatics

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