Bioinformatics

Comparative genomic analysis of Mycobacterium tuberculosis reveals evolution and genomic instability within Uganda I sub-lineage
Stephen Kanyerezi, Patricia Nabisubi

bioRxiv 2020.10.24.353425; doi: https://doi.org/10.1101/2020.10.24.353425 New Results

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Metagenomic evidence for a polymicrobial signature of sepsis
Cedric Chih Shen Tan, Mislav Acman, Lucy van Dorp, Francois Balloux

bioRxiv 2020.04.07.028837; doi: https://doi.org/10.1101/2020.04.07.028837 New Results

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HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding
Edwin A. Solares, Yuan Tao, Anthony D. Long, Brandon S. Gaut

bioRxiv 2020.06.29.178848; doi: https://doi.org/10.1101/2020.06.29.178848 New Results

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Simulating the outcome of amyloid treatments in Alzheimer’s Disease from multi-modal imaging and clinical data
Clément Abi Nader, Nicholas Ayache, Giovanni B. Frisoni, Philippe Robert, Marco Lorenzi, for the Alzheimer’s Disease Neuroimaging Initiative

bioRxiv 2020.09.02.279521; doi: https://doi.org/10.1101/2020.09.02.279521 New Results

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ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses
Natasha Pavlovikj, Joao Carlos Gomes-Neto, Jitender S. Deogun, Andrew K. Benson

bioRxiv 2020.10.13.336479; doi: https://doi.org/10.1101/2020.10.13.336479 New Results

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InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network
Isak Johansson-Åkhe, Claudio Mirabello, Björn Wallner

bioRxiv 2020.09.07.285957; doi: https://doi.org/10.1101/2020.09.07.285957 New Results

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Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Brian L. Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel G. Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo García-Sastre, Melanie Ott, Marina Sirota

bioRxiv 2020.10.23.352666; doi: https://doi.org/10.1101/2020.10.23.352666 New Results

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echolocatoR: an automated end-to-end statistical and functional genomic fine-mapping pipeline
Brian M. Schilder, Jack Humphrey, Towfique Raj

bioRxiv 2020.10.22.351221; doi: https://doi.org/10.1101/2020.10.22.351221 New Results

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Functional Microswitches of Mammalian G Protein-Coupled Bitter-Taste Receptors
Jérémie Topin, Cédric Bouysset, Yiseul Kim, MeeRa Rhyu, Sébastien Fiorucci, Jérôme Golebiowski

bioRxiv 2020.10.23.348706; doi: https://doi.org/10.1101/2020.10.23.348706 New Results

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Association Plots: Visualizing associations in high-dimensional correspondence analysis biplots
Elzbieta Gralinska, Martin Vingron

bioRxiv 2020.10.23.352096; doi: https://doi.org/10.1101/2020.10.23.352096 New Results

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Bioinformatics

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