Bioinformatics

Machine learning based classification of cells into chronological stages using single-cell transcriptomics.
Sumeet Pal Singh, Sharan Janjuha, Samata Chaudhuri, Susanne Reinhardt, Sevina Dietz, Anne Eugster, Halil Bilgin, Selçuk Korkmaz, John E Reid, Gökmen Zararsiz, Nikolay Ninov

bioRxiv 303214; doi: https://doi.org/10.1101/303214 New Results
TNER: A Novel Background Error Suppression Method for Mutation Detection in Circulating Tumor DNA
Shibing Deng, Maruja Lira, Donghui Huang, Kai Wang, Crystal Valdez, Jennifer Kinong, Paul A. Rejto, Jadwiga R. Bienkowska, James Hardwick, Tao Xie

bioRxiv 214379; doi: https://doi.org/10.1101/214379 New Results
Prognostic models for Ebola virus disease derived from data collected at five treatment units in Sierra Leone and Liberia: performance, external validation, and risk visualization
Andres Colubri, Adam C Levine, Mathew Siakor, Vanessa Wolfman, Mary-Anne Hartley, Tom Sesay, August Felix, Pardis C Sabeti

bioRxiv 294587; doi: https://doi.org/10.1101/294587 New Results
HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor
Lucas Schiffer, Rimsha Azhar, Lori Shepherd, Marcel Ramos, Ludwig Geistlinger, Curtis Huttenhower, Jennifer B Dowd, Nicola Segata, Levi Waldron

bioRxiv 299115; doi: https://doi.org/10.1101/299115 New Results
Discovering epistatic feature interactions from neural network models of regulatory DNA sequences
Peyton G Greenside, Tyler Shimko, Polly Fordyce, Anshul Kundaje

bioRxiv 302711; doi: https://doi.org/10.1101/302711 New Results
Six species of non-tuberculosis mycobacteria carry non-identical 16S rRNA gene copies
Keita Takeda, Kinuyo Chikamatsu, Yuriko Igarashi, Yuta Morishige, Yoshiro Murase, Akio Aono, Hiroyuki Yamada, Akiko Takaki, Satoshi Mitarai

bioRxiv 302836; doi: https://doi.org/10.1101/302836 New Results
FESTA: Flexible Exon-based Splicing and Transcription Annotation
Alfredo Rago, John Kenneth Colbourne

bioRxiv 300947; doi: https://doi.org/10.1101/300947 New Results
Pisces: An Accurate and Versatile Variant Caller for Somatic and Germline Next-Generation Sequencing Data
Tamsen Dunn, Gwenn Berry, Dorothea Emig-Agius, Yu Jiang, Serena Lei, Anita Iyer, Nitin Udar, Han-Yu Chuang, Jeff Hegarty, Michael Dickover, Brandy Klotzle, Justin Robbins, Marina Bibikova, Marc Peeters, Michael Stromberg

bioRxiv 291641; doi: https://doi.org/10.1101/291641 New Results
CELLector: Genomics Guided Selection of Cancer in vitro Models
Hanna Najgebauer, Mi Yang, Hayley Francies, Euan A Stronach, Mathew J Garnett, Julio Saez-Rodriguez, Francesco Iorio

bioRxiv 275032; doi: https://doi.org/10.1101/275032 New Results
Selection of time points for costly experiments: a comparison between human intuition and computer-aided experimental design
Daphne Ezer, Joseph C Keir

bioRxiv 301796; doi: https://doi.org/10.1101/301796 New Results

Bioinformatics

Pages