Bioinformatics

A multilevel statistical toolkit to study animal social networks: Animal Network Toolkit (ANT) R package
Sebastian Sosa, Ivan Puga-Gonzalez, He Hu Feng, Peng Zhang, Xie Xiaohua, Cédric Sueur

bioRxiv 347005; doi: https://doi.org/10.1101/347005 New Results
Probabilistic variable-length segmentation of protein sequences for discriminative motif mining (DiMotif) and sequence embedding (ProtVecX)
Ehsaneddin Asgari, Alice McHardy, Mohammad R. K. Mofrad

bioRxiv 345843; doi: https://doi.org/10.1101/345843 New Results
Haplotype assembly of autotetraploid potato using integer linear programming
Enrico Siragusa, Richard Finkers, Laxmi Parida

bioRxiv 346429; doi: https://doi.org/10.1101/346429 New Results
Influence of activation pattern estimates and statistical significance tests in fMRI decoding analysis
Juan E Arco, Carlos González-García, Paloma Díaz-Gutiérrez, Javier Ramírez, Maria Ruz

bioRxiv 344549; doi: https://doi.org/10.1101/344549 New Results
Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
Andrian Yang, Joshua Y. S. Tang, Michael Troup, Joshua W. K. Ho

bioRxiv 345876; doi: https://doi.org/10.1101/345876 New Results
Assigning enzyme sequences to orphan and novel reactions using knowledge of substrate reactive sites
Noushin Hadadi, Homa MohamadiPeyhani, Ljubisa Miskovic, Marianne Seijo, Vassily Hatzimanikatis

bioRxiv 210039; doi: https://doi.org/10.1101/210039 New Results
SSCC: a computational framework for rapid and accurate clustering of large-scale single cell RNA-seq data
Xianwen Ren, Liangtao Zheng, Zemin Zhang

bioRxiv 344242; doi: https://doi.org/10.1101/344242 New Results
Eight new genomes of organohalide-respiring Dehalococcoides mccartyi reveal evolutionary trends in reductive dehalogenases
Olivia Molenda, Shuiquan Tang, Line Lomheim, Elizabeth A Edwards

bioRxiv 345173; doi: https://doi.org/10.1101/345173 New Results
CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data
Jonathan Y Hsu, Charles P Fulco, Mitchel A Cole, Matthew C Canver, Danilo Pellin, Falak Sher, Rick Farouni, Kendell Clement, James A Guo, Luca Biasco, Stuart H Orkin, Jesse M Engreitz, Eric S Lander, J. Keith Joung, Daniel E Bauer, Luca Pinello

bioRxiv 345850; doi: https://doi.org/10.1101/345850 New Results
Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads
Huilong Du, Chengzhi Liang

bioRxiv 345983; doi: https://doi.org/10.1101/345983 New Results

Bioinformatics

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