Bioinformatics

Translationally controlled tumor protein TCTP as Peptide Vaccine against Schistosoma japonicum: an immunoinformatics approach
Rayan A Abdalrahman, Shima S Ahmed, Mahmoud A Elnaeem, Marwa S Mohammed, Nawraz M Jammie, Israa A Yousif, Wala H Mohamed, Sabreen Y Nasr, Mawadda A Awad-Elkareem, Mohamed A Hassan

bioRxiv 466847; doi: https://doi.org/10.1101/466847 New Results

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Ludicrous Speed Linear Mixed Models for Genome-Wide Association Studies
Carl Kadie, David Heckerman

bioRxiv 154682; doi: https://doi.org/10.1101/154682 New Results

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The evolutionary origin of the universal distribution of fitness effect
Ayuna Barlukova, Gabriele Pedruzzi, Igor M. Rouzine

bioRxiv 867390; doi: https://doi.org/10.1101/867390 New Results

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All of gene expression (AOE): an integrated index for public gene expression databases
Hidemasa Bono

bioRxiv 626754; doi: https://doi.org/10.1101/626754 New Results

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Sierra: Discovery of differential transcript usage from polyA-captured single-cell RNA-seq data
Ralph Patrick, David Humphreys, Alicia Oshlack, Joshua W.K. Ho, Richard P. Harvey, Kitty K. Lo

bioRxiv 867309; doi: https://doi.org/10.1101/867309 New Results

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Learning from Synthetic Dataset for Crop Seed Instance Segmentation
Yosuke Toda, Fumio Okura, Jun Ito, Satoshi Okada, Toshinori Kinoshita, Hiroyuki Tsuji, Daisuke Saisho

bioRxiv 866921; doi: https://doi.org/10.1101/866921 New Results

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Improving the clinical performance of blood-based DNA methylation biomarkers utilizing locus-specific epigenetic heterogeneity
Brendan F. Miller, Thomas R. Pisanic II, Gennady Margolin, Hanna M. Petrykowska, Pornpat Athamanolap, Alexander Goncearenco, Akosua Osei-Tutu, Christina M. Annunziata, Tza-Huei Wang, Laura Elnitski

bioRxiv 579839; doi: https://doi.org/10.1101/579839 New Results

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Efficient Manipulation and Generation of Kirchhoff Polynomials for the Analysis of Non-equilibrium Biochemical Reaction Networks
Pencho Yordanov, Jörg Stelling

bioRxiv 868323; doi: https://doi.org/10.1101/868323 New Results

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RADAR: Differential analysis of MeRIP-seq data with a random effect model
Zijie Zhang, Qi Zhan, Mark Eckert, Allen Zhu, Agnieszka Chryplewicz, Dario F De Jesus, Decheng Ren, Rohit N Kulkarni, Ernst Lengyel, Chuan He, Mengjie Chen

bioRxiv 867903; doi: https://doi.org/10.1101/867903 New Results

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HIV-DRLink: A tool for detecting linked HIV-1 drug resistance mutations in next generation sequencing data
Wei Shao, Valerie F. Boltz, Junko Hattori, Michael J. Bale, Frank Maldarelli, John M. Coffin, Mary F. Kearney

bioRxiv 866715; doi: https://doi.org/10.1101/866715 New Results

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Bioinformatics

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