Bioinformatics

Novel graph theoretic biological pathway network analytics methods for analyzing and discovering Alzheimer’s disease related genes
Subrata Saha, Ahmed Soliman, Sanguthevar Rajasekaran

bioRxiv 2021.10.19.465019; doi: https://doi.org/10.1101/2021.10.19.465019 New Results

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KIMGENS: A novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure
Yen-Wen Wang, Cécile Ané

bioRxiv 2021.10.19.465018; doi: https://doi.org/10.1101/2021.10.19.465018 New Results

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Expanding the pool of public controls for GWAS via a method for combining genotypes from arrays and sequencing
Ravi Mathur, Fang Fang, Nathan Gaddis, Dana B. Hancock, Michael H. Cho, John E. Hokanson, Laura J. Bierut, Sharon M. Lutz, Kendra Young, Albert V. Smith, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Edwin K. Silverman, Grier P. Page, Eric O. Johnson

bioRxiv 2021.10.19.464854; doi: https://doi.org/10.1101/2021.10.19.464854 New Results

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ZipHiC: a novel Bayesian framework to identify enriched interactions and experimental biases in Hi-C data
Itunu G. Osuntoki, Andrew Harrison, Hongsheng Dai, Yanchun Bao, Nicolae Radu Zabet

bioRxiv 2021.10.19.463680; doi: https://doi.org/10.1101/2021.10.19.463680 New Results

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BioCompute Objects to communicate a viral detection pipeline with potential for use in a regulatory environment
Naila Gulzar, Jonathon Keeney, Jack B. Baker, Ondrej Klempir, Geoffrey Hannigan, Danny A. Bitton, Julia M Maritz, Charles Hadley S. King IV, Janisha A. Patel, Paul Duncan, Raja Mazumder

bioRxiv 2021.10.19.465010; doi: https://doi.org/10.1101/2021.10.19.465010 New Results

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A Computational Approach in Identification of Putative Risk Genes in Parkinsons Disease
Bhargav Dave, Prasenjit Majumder, Shamayeeta Sarkar

bioRxiv 2021.10.13.463941; doi: https://doi.org/10.1101/2021.10.13.463941 Confirmatory Results

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Analysing and identifying miRNAs from RNA-seq data using miRDeep2 tool in Galaxy, a practical guide
M. Rifqi Rafsanjani

bioRxiv 2021.10.19.464446; doi: https://doi.org/10.1101/2021.10.19.464446 Confirmatory Results

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Kinome state is predictive of cell viability in pancreatic cancer tumor and stroma cell lines
Matthew E. Berginski, Madison R. Jenner, Chinmaya U. Joisa, Silvia G. Herrera Loeza, Brian T. Golitz, Matthew B. Lipner, John R. Leary, Naim U. Rashid, Gary L. Johnson, Jen Jen Yeh, Shawn M. Gomez

bioRxiv 2021.07.21.451515; doi: https://doi.org/10.1101/2021.07.21.451515 New Results

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VSS-Hi-C: Variance-stabilized signals for chromatin 3D contacts
Faezeh Bayat, Maxwell Libbrecht

bioRxiv 2021.10.19.465027; doi: https://doi.org/10.1101/2021.10.19.465027 New Results

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Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in Diaphorina citri
Rebecca Grace, Crissy Massimino, Teresa D. Shippy, Will Tank, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Joshua B. Benoit, Susan J. Brown, Tom D’Elia, Surya Saha

bioRxiv 2021.10.18.464890; doi: https://doi.org/10.1101/2021.10.18.464890 New Results

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Bioinformatics

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