Bioinformatics

FASTCAR: Rapid alignment-free prediction of sequence alignment identity scores using self-supervised general linear models
Benjamin T James, Brian B Luczak, Hani Z Girgis

bioRxiv 380824; doi: https://doi.org/10.1101/380824 New Results
Comparison Between UMAP and t-SNE for Multiplex-Immunofluorescence Derived Single-Cell Data from Tissue Sections
Duoduo Wu, Joe Yeong, Grace Tan, Marion Chevrier, Josh Loh, Tony Lim, Jinmiao Chen

bioRxiv 549659; doi: https://doi.org/10.1101/549659 New Results
VariantKey - A Reversible Numerical Representation of Human Genetic Variants
Nicola Asuni, Steven Wilder

bioRxiv 473744; doi: https://doi.org/10.1101/473744 New Results
Host_microbe_PPI - R package to analyse intra-species and inter-species protein-protein interactions in the model plant Arabidopsis thaliana
Thomas Nussbaumer

bioRxiv 551275; doi: https://doi.org/10.1101/551275 New Results
CompScore: boosting structure-based virtual screening performance by incorporating docking scoring functions components into consensus scoring
Yunierkis Perez-Castillo, Stellamaris Sotomayor-Burneo, Karina Jimenes-Vargas, Mario Gonzalez-Rodriguez, Maykel Cruz-Monteagudo, Vinicio Armijos-Jaramillo, M. Natalia D. S. Cordeiro, Fernanda Borges, Aminael Sanchez-Rodriguez, Eduardo Tejera

bioRxiv 550590; doi: https://doi.org/10.1101/550590 New Results
PRECISE: A domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors
Soufiane Mourragui, Marco Loog, Marcel JT Reinders, Lodewyk FA Wessels

bioRxiv 536797; doi: https://doi.org/10.1101/536797 New Results
Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage
Anna Katharina Lau, Chris-Andre Leimeister, Burkhard Morgenstern

bioRxiv 550632; doi: https://doi.org/10.1101/550632 New Results
Detection and assembly of novel sequence insertions using Linked-Read technology
Dmitry Meleshko, Patrick Marks, Stephen Williams, Iman Hajirasouliha

bioRxiv 551028; doi: https://doi.org/10.1101/551028 New Results
Alpaca: a kmer-based approach for investigating mosaic structures in microbial genomes
Alex Salazar, Thomas Abeel

bioRxiv 551234; doi: https://doi.org/10.1101/551234 New Results
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
Carol E Zhou, Stephanie A Malfatti, Jeffrey A Kimbrel, Casandra W Philipson, Katelyn E McNair, Theron C Hamilton, Robert A Edwards, Brian E Souza

bioRxiv 551010; doi: https://doi.org/10.1101/551010 New Results

Bioinformatics

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