Bioinformatics

Klarigi: Characteristic Explanations for Semantic Data
Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V Gkoutos

bioRxiv 2021.06.14.448423; doi: https://doi.org/10.1101/2021.06.14.448423 New Results

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Protein Fold Classification using Graph Neural Network and Protein Topology Graph
Suri Dipannita Sayeed, Jan Niclas Wolf, Ina Koch, Guang Song

bioRxiv 2022.08.10.503436; doi: https://doi.org/10.1101/2022.08.10.503436 New Results

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PeTriBERT : Augmenting BERT with tridimensional encoding for inverse protein folding and design
Baldwin Dumortier, Antoine Liutkus, Clément Carré, Gabriel Krouk

bioRxiv 2022.08.10.503344; doi: https://doi.org/10.1101/2022.08.10.503344 New Results

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Accessible, interactive and cloud-enabled genomic workflows integrated with the NCI Genomic Data Commons
Ling-Hong Hung, Bryce Fukuda, Robert Schmitz, Varik Hoang, Wes Lloyd, Ka Yee Yeung

bioRxiv 2022.08.11.503660; doi: https://doi.org/10.1101/2022.08.11.503660 New Results

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A field-wide assessment of differential expression profiling by high throughput sequencing reveals widespread bias
Taavi Päll, Hannes Luidalepp, Tanel Tenson, Ülo Maiväli

bioRxiv 2021.01.04.424681; doi: https://doi.org/10.1101/2021.01.04.424681 New Results

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Decoding functional cell–cell communication events by multi-view graph learning on spatial transcriptomics
Haochen Li, Tianxing Ma, Minsheng Hao, Lei Wei, Xuegong Zhang

bioRxiv 2022.06.22.496105; doi: https://doi.org/10.1101/2022.06.22.496105 New Results

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SALMA: Scalable ALignment using MAFFT-Add
Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy Warnow

bioRxiv 2022.05.23.493139; doi: https://doi.org/10.1101/2022.05.23.493139 New Results

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In silico repurposed drugs against monkeypox virus
Hilbert Yuen In Lam, Jia Sheng Guan, Yuguang Mu

bioRxiv 2022.07.17.500371; doi: https://doi.org/10.1101/2022.07.17.500371 New Results

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‘Targeting’ the Search: An Upgraded Structural and Functional Repository of Antimicrobial Peptides for Biofilm Studies (B-AMP v2.0) with a Focus on Biofilm Protein Targets
Shashank Ravichandran, Sai Supriya Avatapalli, Yatindrapravanan Narasimhan, Karishma S Kaushik, Ragothaman M Yennamalli

bioRxiv 2022.08.11.503698; doi: https://doi.org/10.1101/2022.08.11.503698 New Results

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Cytomulate: Accurate and Efficient Simulation of CyTOF data
Yuqiu Yang, Kaiwen Wang, Zeyu Lu, Tao Wang, Xinlei Wang

bioRxiv 2022.06.14.496200; doi: https://doi.org/10.1101/2022.06.14.496200 New Results

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Bioinformatics

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