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  • A community-based collaboration to build prediction models for short-term discontinuation of docetaxel in metastatic castration-resistant prostate cancer
    Fatemeh Seyednasrollah, Devin C Koestler, Tao Wang, Stephen R Piccolo, Roberto Vega, Russ Greiner, Christiane Fuchs, Eyal Gofer, Luke Kumar, Russell D Wolfinger, Kimberly Kanigel Winner, Chris Bare, Elias Chaibub Neto, Thomas Yu, Liji Shen, Kald Abdallah, Thea Norman, Gustavo Stolovitzky, PCC-DREAM Community, Howard Soule, Christopher J Sweeney, Charles J Ryan, Howard I Scher, Oliver Sartor, Laura L Elo, Fang Liz Zhou, Justin Guinney, James C Costello
    bioRxiv 087809; doi: https://doi.org/10.1101/087809
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  • EXPLOITING NEXT GENERATION SEQUENCING TO SOLVE THE HAPLOTYPING PUZZLE IN POLYPLOIDS: A SIMULATION STUDY
    Ehsan Motazedi, Richard Finkers, Chris Maliepaard, Dick de Ridder
    bioRxiv 088112; doi: https://doi.org/10.1101/088112
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  • Efficient Heuristic for Decomposing a Flow with Minimum Number of Paths
    Mingfu Shao, Carl Kingsford
    bioRxiv 087759; doi: https://doi.org/10.1101/087759
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  • Efficient randomization of biological networks while preserving functional characterization of individual nodes
    Francesco iorio, Marti Bernardo-Faura, Andrea Gobbi, Thomas Cokelae, Giuseppe Jurman, Julio Saez-Rodrigue
    bioRxiv 069245; doi: https://doi.org/10.1101/069245
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  • Bit-twiddling on Nucleotides
    Fabian Klötzl
    bioRxiv 082214; doi: https://doi.org/10.1101/082214
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  • SplitThreader: Exploration and analysis of rearrangements in cancer genomes
    Maria Nattestad, Marley C. Alford, Fritz J. Sedlazeck, Michael C. Schatz
    bioRxiv 087981; doi: https://doi.org/10.1101/087981
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  • Scalable latent-factor models applied to single-cell RNA-seq data separate biological drivers from confounding effects
    Florian Buettner, Naruemon Pratanwanich, John C. Marioni, Oliver Stegle
    bioRxiv 087775; doi: https://doi.org/10.1101/087775
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  • ROSE: a deep learning based framework for predicting ribosome stalling
    Sai Zhang, Hailin Hu, Jingtian Zhou, Xuan He, Tao Jiang, Jianyang Zeng
    bioRxiv 067108; doi: https://doi.org/10.1101/067108
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  • Automatic Tracing of Ultra-Volume of Neuronal Images
    Hanchuan Peng, Zhi Zhou, Erik Meijering, Ting Zhao, Giorgio A. Ascoli, Michael Hawrylycz
    bioRxiv 087726; doi: https://doi.org/10.1101/087726
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  • WhatsHap: fast and accurate read-based phasing
    Marcel Martin, Murray Patterson, Shilpa Garg, Sarah O Fischer, Nadia Pisanti, Gunnar W Klau, Alexander Schöenhuth, Tobias Marschall
    bioRxiv 085050; doi: https://doi.org/10.1101/085050
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