Bioinformatics

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Measuring the importance of annotation granularity to the detection of semantic similarity between phenotype profiles
Prashanti Manda, James P. Balhoff, Todd J. Vision

bioRxiv 086306; doi: https://doi.org/10.1101/086306

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Exploiting expression patterns across multiple gene isoforms to identify radiation response biomarkers in early-stage breast cancer patients
Chaitanya R. Acharya, Kouros Owzar, Janet K. Horton, Andrew S. Allen

bioRxiv 086322; doi: https://doi.org/10.1101/086322

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Development and assessment of fully automated and globally transitive geometric morphometric methods, with application to a biological comparative dataset with high interspecific variation
Tingran Gao, Gabriel S. Yapuncich, Ingrid Daubechies, Sayan Mukherjee, Doug M. Boyer

bioRxiv 086280; doi: https://doi.org/10.1101/086280

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Deep learning with feature embedding for compound-protein interaction prediction
Fangping Wan, Jianyang (Michael) Zeng

bioRxiv 086033; doi: https://doi.org/10.1101/086033

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Quark enables semi-reference-based compression of RNA-seq data
Hirak Sarkar, Rob Patro

bioRxiv 085878; doi: https://doi.org/10.1101/085878

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CAMSA: a Tool for Comparative Analysis and Merging of Scaffold Assemblies
Sergey S. Aganezov, Max A. Alekseyev

bioRxiv 069153; doi: https://doi.org/10.1101/069153

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Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search
Hiroki Sudo, Masanobu Jimbo, Koji Nuida, Kana Shimizu

bioRxiv 085647; doi: https://doi.org/10.1101/085647

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Assessment of Antibody Library Diversity through Next Generation Sequencing and Technical Error Compensation
Marco Fantini, Luca Pandolfini, Simonetta Lisi, Michele Chirichella, Ivan Arisi, Marco Terrigno, Martina Goracci, Federico Cremisi, Antonino Cattaneo

bioRxiv 085498; doi: https://doi.org/10.1101/085498

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RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach
Xiaoyong Pan, Hong-Bin Shen

bioRxiv 085191; doi: https://doi.org/10.1101/085191

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Duplicates, redundancies, and inconsistencies in the primary nucleotide databases: a descriptive study
Qingyu Chen, Justin Zobel, Karin Verspoor

bioRxiv 085019; doi: https://doi.org/10.1101/085019

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