Bioinformatics

Automatic time-series phenotyping using massive feature extraction
B. D. Fulcher, N. S. Jones

bioRxiv 081463; doi: https://doi.org/10.1101/081463

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Semi-automated genome annotation using epigenomic data and Segway
Eric G. Roberts, Mickaël Mendez, Coby Viner, Mehran Karimzadeh, Rachel Chan, Rachel Ancar, Davide Chicco, Jay R. Hesselberth, Anshul Kundaje, Michael M. Hoffman

bioRxiv 080382; doi: https://doi.org/10.1101/080382

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Identification of new bacterial type III secreted effectors with a recursive Hidden Markov Model profile-alignment strategy
Xi Cheng, Xinjie Hui, Aaron P. White, Zhirong Guo, Yueming Hu, Yejun Wang

bioRxiv 081265; doi: https://doi.org/10.1101/081265

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UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing
Robert C. Edgar

bioRxiv 081257; doi: https://doi.org/10.1101/081257

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ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data
Elizabeth Baskin, Rick Farouni, Ewy A. Mathe

bioRxiv 080564; doi: https://doi.org/10.1101/080564

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Benchmarking substrate-based kinase activity inference using phosphoproteomic data
Claudia Hernandez-Armenta, David Ochoa, Emanuel Gonçalves, Julio Saez-Rodriguez, Pedro Beltrao

bioRxiv 080978; doi: https://doi.org/10.1101/080978

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AGFusion: annotate and visualize gene fusions
Charlie Murphy, Olivier Elemento

bioRxiv 080903; doi: https://doi.org/10.1101/080903

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Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways
Lynn Yi, Harold Pimentel, Lior Pachter

bioRxiv 072439; doi: https://doi.org/10.1101/072439

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Proteobacteria drive significant functional variability in the human gut microbiome
Patrick H. Bradley, Katherine S. Pollard

bioRxiv 056614; doi: https://doi.org/10.1101/056614

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ssHMM: Extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data
David Heller, Martin Vingron, Ralf Krestel, Uwe Ohler, Annalisa Marsico

bioRxiv 076034; doi: https://doi.org/10.1101/076034

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Bioinformatics

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