Bioinformatics

Alignment by numbers: sequence assembly using compressed numerical representations
Avraam Tapinos, Bede Constantinides, Douglas B Kell, David L Robertson

bioRxiv 011940; doi: https://doi.org/10.1101/011940

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Linked annotations: a middle ground for manual curation of biomedical databases and text corpora
Tatyana Goldberg, Shrikant Vinchurkar, Juan Miguel Cejuela, Lars Juhl Jensen, Burkhard Rost

bioRxiv 014274; doi: https://doi.org/10.1101/014274

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Segmentation of Noisy Signals Generated By a Nanopore
Jacob Schreiber, Kevin Karplus

bioRxiv 014258; doi: https://doi.org/10.1101/014258

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JAFFA: High sensitivity transcriptome-focused fusion gene detection
Nadia M. Davidson, Ian J. Majewski, Alicia Oshlack

bioRxiv 013698; doi: https://doi.org/10.1101/013698

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Alternative splicing QTLs in European and African populations using Altrans, a novel method for splice junction quantification
Halit Ongen, Emmanouil T. Dermitzakis

bioRxiv 014126; doi: https://doi.org/10.1101/014126

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MultiMeta: an R package for meta-analysing multi-phenotype genome-wide association studies
D. Vuckovic, P. Gasparini, N. Soranzo, V. Iotchkova

bioRxiv 013920; doi: https://doi.org/10.1101/013920

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Phylesystem: a git-based data store for community curated phylogenetic estimates
Emily Jane McTavish, Cody E. Hinchliff, James F. Allman, Joseph W. Brown, Karen A. Cranston, Mark T. Holder, Jonathan A. Rees, Stephen A. Smith

bioRxiv 013862; doi: https://doi.org/10.1101/013862

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SW#db: GPU-accelerated exact sequence similarity database search
Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić

bioRxiv 013805; doi: https://doi.org/10.1101/013805

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SCIE: Information Extraction for Spinal Cord Injury Preclinical Experiments – A Webservice and Open Source Toolkit
Andreas Stöckel, Benjamin Paassen, Raphael Dickfelder, Jan Philip Göpfert, Nicole Brazda, Hans Werner Müller, Philipp Cimiano, Matthias Hartung, Roman Klinger

bioRxiv 013458; doi: https://doi.org/10.1101/013458

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Merging OpenLifeData with SADI services using Galaxy and Docker
Mikel Egañna Aranguren

bioRxiv 013615; doi: https://doi.org/10.1101/013615

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Bioinformatics

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