Bioinformatics

Large-Scale Search of Transcriptomic Read Sets with Sequence Bloom Trees
Brad Solomon, Carleton Kingsford

bioRxiv 017087; doi: https://doi.org/10.1101/017087

Add to Selected Citations
Software for the analysis and visualization of deep mutational scanning data
Jesse D. Bloom

bioRxiv 013623; doi: https://doi.org/10.1101/013623

Add to Selected Citations
LargeQvalue: A Program for Calculating FDR Estimates with Large Datasets
Andrew Anand Brown

bioRxiv 010074; doi: https://doi.org/10.1101/010074 Confirmatory Results

Add to Selected Citations
SomaticSignatures: Inferring Mutational Signatures from Single Nucleotide Variants
Julian S. Gehring, Bernd Fischer, Michael Lawrence, Wolfgang Huber

bioRxiv 010686; doi: https://doi.org/10.1101/010686

Add to Selected Citations
A complete bacterial genome assembled de novo using only nanopore sequencing data
Nicholas J. Loman, Joshua Quick, Jared T. Simpson

bioRxiv 015552; doi: https://doi.org/10.1101/015552

Add to Selected Citations
ISMapper: Identifying insertion sequences in bacterial genomes from short read sequence data
Jane Hawkey, Mohammad Hamidian, Ryan R. Wick, David J. Edwards, Helen Billman-Jacob, Ruth M. Hall, Kathryn E. Holt

bioRxiv 016345; doi: https://doi.org/10.1101/016345

Add to Selected Citations
Revisiting the Structure/Function Relationships of H/ACA(-like) RNAs: A Unified Model for Euryarchaea and Crenarchaea
Claire Toffano-Nioche, Daniel Gautheret, Fabrice Leclerc

bioRxiv 016246; doi: https://doi.org/10.1101/016246

Add to Selected Citations
Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads
Hung-I Harry Chen, Yuanhang Liu, Yi Zou, Zhao Lai, Devanand Sarkar, Yufei Huang, Yidong Chen

bioRxiv 016196; doi: https://doi.org/10.1101/016196

Add to Selected Citations
Interactive analysis and quality assessment of single-cell copy-number variations
Tyler Garvin, Robert Aboukhalil, Jude Kendall, Timour Baslan, Gurinder S. Atwal, James Hicks, Michael Wigler, Michael C. Schatz

bioRxiv 011346; doi: https://doi.org/10.1101/011346

Add to Selected Citations
The In Silico Genotyper (ISG): an open-source pipeline to rapidly identify and annotate nucleotide variants for comparative genomics applications
Jason W. Sahl, Stephen M. Beckstrom-Sternberg, James S. Babic-Sternberg, John D. Gillece, Crystal M. Hepp, Raymond K. Auerbach, Waibhav Tembe, David M. Wagner, Paul S. Keim, Talima Pearson

bioRxiv 015578; doi: https://doi.org/10.1101/015578

Add to Selected Citations

Bioinformatics

Pages