Bioinformatics

Efficient cardinality estimation for k-mers in large DNA sequencing data sets
Luiz C. Irber Jr., C. Titus Brown

bioRxiv 056846; doi: https://doi.org/10.1101/056846

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Phylogenetic and structural analyses reveal the determinants of DNA binding specificities of nucleoid-associated proteins HU and IHF
Debayan Dey, Valakunja Nagaraja, Suryanarayanarao Ramakumar

bioRxiv 057489; doi: https://doi.org/10.1101/057489

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Estimating the functional impact of INDELs in transcription factor binding sites: a genome-wide landscape
Esben Eickhardt, Thomas Damm Als, Jakob Grove, Anders Dupont Boerglum, Francesco Lescai

bioRxiv 057604; doi: https://doi.org/10.1101/057604

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cgCorrect: A method to correct for confounding cell-cell variation due to cell growth in single-cell transcriptomics
Thomas Blasi, Florian Buettner, Michael K. Strasser, Carsten Marr, Fabian J. Theis

bioRxiv 057463; doi: https://doi.org/10.1101/057463

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Lepbase: the Lepidopteran genome database
Richard J Challi, Sujai Kumar, Kanchon K Dasmahapatra, Chris D Jiggins, Mark Blaxter

bioRxiv 056994; doi: https://doi.org/10.1101/056994

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fluff: exploratory analysis and visualization of high-throughput sequencing data
Georgios Georgiou, Simon J. van Heeringen

bioRxiv 045526; doi: https://doi.org/10.1101/045526

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Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing
Chen-Shan Chin, Paul Peluso, Fritz J. Sedlazeck, Maria Nattestad, Gregory T. Concepcion, Alicia Clum, Christopher Dunn, Ronan O'Malley, Rosa Figueroa-Balderas, Abraham Morales-Cruz, Grant R. Cramer, Massimo Delledonne, Chongyuan Luo, Joseph R. Ecker, Dario Cantu, David R. Rank, Michael C. Schatz

bioRxiv 056887; doi: https://doi.org/10.1101/056887

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Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
Dong Li, Shan He

bioRxiv 056952; doi: https://doi.org/10.1101/056952

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MODA: MOdule Differential Analysis for weighted gene co-expression network
Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu, Shan He

bioRxiv 053496; doi: https://doi.org/10.1101/053496

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Fast and Robust Segmentation of Copy Number Profiles Using Multi-Scale Edge Detection
Ivo W Kwee, Andrea Rinaldi, Cassio Polpo de Campos, Francesco Bertoni

bioRxiv 056705; doi: https://doi.org/10.1101/056705

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Bioinformatics

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