Genomics

High-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis
Yue Fan, Tauras P. Vilgalys, Shiquan Sun, Qinke Peng, Jenny Tung, Xiang Zhou

bioRxiv 615039; doi: https://doi.org/10.1101/615039 New Results
The Chinese chestnut genome: a reference for species restoration
Margaret E. Staton, Charles A. Addo-Quaye, Nathaniel Cannon, Yongshuai Sun, Tetyana Zhebentyayeva, Matthew Huff, Shenghua Fan, Emily Bellis, Nurul M. Islam-Faridi, Jiali Yu, Nathan Henry, Anna Conrad, Daniela I. Drautz-Moses, Xingfu Zhu, Zhiqiang Lu, Rooksana E. Noorai, Stephen Ficklin, Christopher Saski, Mihir Mandal, Tyler K. Wagner, Nicole Zembower, Catherine Bodenes, Jason Holliday, Jared Westbrook, Jesse R. Lasky, Laura Georgi, Fred Hebard, Charles D. Nelson, Stephan C. Schuster, Albert G. Abbott, John E. Carlson

bioRxiv 615047; doi: https://doi.org/10.1101/615047 New Results
Stacks 2: Analytical Methods for Paired-end Sequencing Improve RADseq-based Population Genomics
Nicolas C Rochette, Angel G Rivera-Colón, Julian M Catchen

bioRxiv 615385; doi: https://doi.org/10.1101/615385 New Results
NCBP2-mediated apoptosis contributes to developmental defects of the schizophrenia-associated 3q29 deletion
Mayanglambam Dhruba Singh, Matthew Jensen, Micaela Lasser, Emily Huber, Tanzeen Yusuff, Lucilla Pizzo, Brian Lifschutz, Inshya Desai, Alexis Kubina, Sneha Yennawar, Sydney Kim, Janani Iyer, Diego E. Rincon-Limas, Laura Anne Lowery, Santhosh Girirajan

bioRxiv 614750; doi: https://doi.org/10.1101/614750 New Results
Whole-genome reference panel of 1,781 Northeast Asians improves imputation accuracy of rare and low-frequency variants
Seong-Keun Yoo, Chang-Uk Kim, Hie Lim Kim, Sungjae Kim, Jong-Yeon Shin, Namcheol Kim, Joshua SungWoo Yang, Kwok-Wai Lo, Belong Cho, Fumihiko Matsuda, Stephan C. Schuster, Changhoon Kim, Jong-Il Kim, Jeong-Sun Seo

bioRxiv 600353; doi: https://doi.org/10.1101/600353 New Results
CyMIRA: The Cytonuclear Molecular Interactions Reference for Arabidopsis
Evan S. Forsythe, Joel Sharbrough, Justin C. Havird, Jessica M. Warren, Daniel B. Sloan

bioRxiv 614487; doi: https://doi.org/10.1101/614487 New Results
Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations
Enrique J. Schwarzkopf, Juan C. Motamayor, Omar E. Cornejo

bioRxiv 482299; doi: https://doi.org/10.1101/482299 New Results
Functional Genomic Complexity Defines Intratumor Heterogeneity and Tumor Aggressiveness in Liver Cancer
So Mee Kwon, Anuradha Budhu, Hyun Goo Woo, Jittiporn Chaisaingmongkol, Hien Dang, Marshonna Forgues, Curtis C. Harris, Gao Zhang, Noam Auslander, Eytan Ruppin, Chulabhorn Mahidol, Mathuros Ruchirawat, Xin Wei Wang

bioRxiv 614057; doi: https://doi.org/10.1101/614057 New Results
A machine-learning approach for accurate detection of copy-number variants from exome sequencing
Vijay Kumar Pounraja, Gopal Jayakar, Matthew Jensen, Neil Kelkar, Santhosh Girirajan

bioRxiv 460931; doi: https://doi.org/10.1101/460931 New Results
Extended haplotype phasing of de novo genome assemblies with FALCON-Phase
Zev N. Kronenberg, Arang Rhie, Sergey Koren, Gregory T. Concepcion, Paul Peluso, Katherine M. Munson, Stefan Hiendleder, Olivier Fedrigo, Erich D. Jarvis, Adam M. Phillippy, Evan E. Eichler, John L. Williams, Tim P.L. Smith, Richard J. Hall, Shawn T. Sullivan, Sarah B. Kingan

bioRxiv 327064; doi: https://doi.org/10.1101/327064 New Results

Genomics

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