Genomics

Mapping the genomic landscape of multidrug resistance in Plasmodium falciparum and its impact on parasite fitness
Sachel Mok, Tomas Yeo, Davin Hong, Melanie J. Shears, Leila S. Ross, Kurt E. Ward, Satish K. Dhingra, Mariko Kanai, Jessica L. Bridgford, Abhai K. Tripathi, Godfree Mlambo, Anna Y. Burkhard, Kate J. Fairhurst, Eva Gil-Iturbe, Heekuk Park, Felix D. Rozenberg, Jonathan Kim, Filippo Mancia, Matthias Quick, Anne-Catrin Uhlemann, Photini Sinnis, David A. Fidock

bioRxiv 2023.06.02.543338; doi: https://doi.org/10.1101/2023.06.02.543338 New Results

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Reference-free multiplexed single-cell sequencing identifies genetic modifiers of the human immune response
George Christopher Hartoularos, Yichen Si, Fan Zhang, Pooja Kathail, David Lee, Anton Ogorodnikov, Yang Sun, Yun S. Song, Hyun Min Kang, Chun Jimmie Ye

bioRxiv 2023.05.29.542756; doi: https://doi.org/10.1101/2023.05.29.542756 New Results

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COBRA improves the quality of viral genomes assembled from metagenomes
LinXing Chen, Jillian F. Banfield

bioRxiv 2023.05.30.542503; doi: https://doi.org/10.1101/2023.05.30.542503 New Results

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NULISA: a novel proteomic liquid biopsy platform with attomolar sensitivity and high multiplexing
Wei Feng, Joanne Beer, Qinyu Hao, Ishara S. Ariyapala, Aparna Sahajan, Andrei Komarov, Katie Cha, Mason Moua, Xiaolei Qiu, Xiaomei Xu, Shweta Iyengar, Thu Yoshimura, Rajini Nagaraj, Li Wang, Ming Yu, Kate Engel, Lucas Zhen, Wen Xue, Chen-jung Lee, Chan Ho Park, Cheng Peng, Kaiyuan Zhang, Adrian Grzybowski, Johnnie Hahm, Susanne V. Schmidt, Alexandru Odainic, Jasper Spitzer, Bonn Consortium COVIMMUNE, Kasun Buddika, Dwight Kuo, Lei Fang, Bingqing Zhang, Steve Chen, Eicke Latz, Yiyuan Yin, Yuling Luo, Xiao-Jun Ma

bioRxiv 2023.04.09.536130; doi: https://doi.org/10.1101/2023.04.09.536130 New Results

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Comprehensive locus-specific L1 DNA methylation profiling reveals the epigenetic and transcriptional interplay between L1s and their integration sites
Sophie Lanciano, Claude Philippe, Arpita Sarkar, David Pratella, Cécilia Domrane, Aurélien J. Doucet, Dominic van Essen, Simona Saccani, Laure Ferry, Pierre-Antoine Defossez, Gael Cristofari

bioRxiv 2023.01.03.522582; doi: https://doi.org/10.1101/2023.01.03.522582 New Results

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Spatial and temporal characterization of the rich fraction of plastid DNA present in the nuclear genome of Moringa oleifera reveals unanticipated complexity in NUPTś formation
Juan Pablo Marczuk-Rojas, Angélica María Álamo-Sierra, Antonio Salmerón, Alfredo Alcayde, Viktor Isanbaev, Lorenzo Carretero-Paulet

bioRxiv 2023.05.31.542793; doi: https://doi.org/10.1101/2023.05.31.542793 New Results

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Genetic determinants of plasma protein levels in the Estonian population
Anette Kalnapenkis, Maarja Jõeloo, Kaido Lepik, Viktorija Kukuškina, Mart Kals, Kaur Alasoo, Estonian Biobank Research Team, Reedik Mägi, Tõnu Esko, Urmo Võsa

bioRxiv 2023.05.30.542983; doi: https://doi.org/10.1101/2023.05.30.542983 New Results

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Reassessing the modularity of gene co-expression networks using the Stochastic Block Model
Diogo Melo, Luisa F. Pallares, Julien F. Ayroles

bioRxiv 2023.05.31.542906; doi: https://doi.org/10.1101/2023.05.31.542906 New Results

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The pan-epigenome of the symbiotic nitrogen fixing bacterium Sinorhizobium meliloti unravels unexpected variability of DNA-methylation profiles in closely related strains
Iacopo Passeri, Lisa Cangioli, Marco Fondi, Alessio Mengoni, Camilla Fagorzi

bioRxiv 2023.05.31.542881; doi: https://doi.org/10.1101/2023.05.31.542881 New Results

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Gene Expression and Physiological traits in Mice
Rafael Ramos, Igor Nelson

bioRxiv 2023.05.30.542939; doi: https://doi.org/10.1101/2023.05.30.542939 Confirmatory Results

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Genomics

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