Genomics

Allele-specific expression reveals genetic drivers of tissue regeneration in mice
Heather E Talbott, Katya L Mack, Michelle Griffin, Nicholas J Guardino, Jennifer BL Parker, Amanda F Spielman, Michael F Davitt, Shamik Mascharak, Mark J. Berger, Derrick C. Wan, Hunter B Fraser, Michael T Longaker

bioRxiv 2022.09.23.509223; doi: https://doi.org/10.1101/2022.09.23.509223 New Results

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Copy number variations shape the structural diversity of Arabidopsis metabolic gene clusters and are associated with the climatic gradient
Malgorzata Marszalek-Zenczak, Anastasiia Satyr, Pawel Wojciechowski, Michal Zenczak, Paula Sobieszczanska, Krzysztof Brzezinski, Tetiana Iefimenko, Marek Figlerowicz, Agnieszka Zmienko

bioRxiv 2022.09.05.506152; doi: https://doi.org/10.1101/2022.09.05.506152 New Results

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B lymphocytes in Treatment-Naive Pediatric Lupus Patients are Epigenetically Distinct from Healthy Children
Joyce Hui-Yuen, Kaiyu Jiang, Susan Malkiel, Barbara Anne Eberhard, Heather Walters, Betty Diamond, James N Jarvis

bioRxiv 2022.09.23.509218; doi: https://doi.org/10.1101/2022.09.23.509218 New Results

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Genome-wide binding of Multiple ankyrin repeats single KH domain reveals its role in maintenance of gene activation by trithorax group proteins in Drosophila
Ammad Shaukat, Muhammad Haider Farooq Khan, Jawad Akhtar, Mahnoor Hussain Bakhtiari, Muhammad Abdul Haseeb, Khalida Mazhar, Zain Umer, Muhammad Tariq

bioRxiv 2022.03.15.484481; doi: https://doi.org/10.1101/2022.03.15.484481 New Results

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Informing plasmid compatibility with bacterial hosts using protein-protein interaction data
Tim Downing, Min Jie Lee, Conor Archbold, Adam McDonnell, Alexander D Rahm

bioRxiv 2022.07.12.499728; doi: https://doi.org/10.1101/2022.07.12.499728 New Results

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Functional interplay between Mediator and RSC chromatin remodeling complex controls nucleosome-depleted region maintenance at promoters
Kévin M. André, Nathalie Giordanengo Aiach, Veronica Martinez-Fernandez, Leo Zeitler, Arach Goldar, Michel Werner, Cyril Denby Wilkes, Julie Soutourina

bioRxiv 2022.09.22.509083; doi: https://doi.org/10.1101/2022.09.22.509083 New Results

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Zooanthroponotic transmission of SARS-CoV-2 and host-specific viral mutations revealed by genome-wide phylogenetic analysis
Sana Naderi, Peter E. Chen, Carmen Lía Murall, Raphael Poujol, Susanne Kraemer, Bradley S. Pickering, Selena M. Sagan, B. Jesse Shapiro

bioRxiv 2022.06.02.494559; doi: https://doi.org/10.1101/2022.06.02.494559 New Results

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Systematic analysis of transcriptional and epigenetic effects of genetic variation in Kupffer cells enables discrimination of cell intrinsic and environment-dependent mechanisms
Hunter Bennett, Ty D. Troutman, Enchen Zhou, Nathanael J. Spann, Verena M. Link, Jason S. Seidman, Christian K. Nickl, Yohei Abe, Mashito Sakai, Martina P. Pasillas, Justin M. Marlman, Carlos Guzman, Mojgan Hosseini, Bernd Schnabl, Christopher K. Glass

bioRxiv 2022.09.22.509046; doi: https://doi.org/10.1101/2022.09.22.509046 New Results

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Statistical learning quantifies transposable element-mediated cis-regulation
Cyril Pulver, Delphine Grün, Julien Duc, Shaoline Sheppard, Evarist Planet, Raphaël de Fondeville, Julien Pontis, Didier Trono

bioRxiv 2022.09.23.509180; doi: https://doi.org/10.1101/2022.09.23.509180 New Results

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Selective enrichment of plasma cell-free messenger RNA in cancer-associated extracellular vesicles
Hyun Ji Kim, Matthew J. Rames, Breeshey Roskams-Hieter, Josephine Briand, Aaron Doe, Joseph Estabrook, Josiah T. Wagner, Emek Demir, Gordon Mills, Thuy T. M. Ngo

bioRxiv 2022.09.22.509102; doi: https://doi.org/10.1101/2022.09.22.509102 New Results

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Genomics

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