Genomics

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  • Leveraging lung tissue transcriptome to uncover candidate causal genes in COPD genetic associations
    Ma'en Obeidat, Maxime Lamontagne, Jean-Christophe Bérubé, Michael H. Cho, Brian D. Hobbs, Kim de Jong, H. Marike Boezen, the International COPD Genetics Consortium, David Nickle, Ke Hao, Wim Timens, Maarten van den Berge, Philippe Joubert, Michel Laviolette, Don D. Sin, Peter D. Paré, Yohan Bossé
    bioRxiv 193938; doi: https://doi.org/10.1101/193938 New Results
  • Improved Prokaryotic Gene Prediction Yields Insights into Transcription and Translation Mechanisms on Whole Genome Scale
    Alexandre Lomsadze, Karl Gemayel, Shiyuyun Tang, Mark Borodovsky
    bioRxiv 193490; doi: https://doi.org/10.1101/193490 New Results
  • Systemic Markers of Adaptive and Innate Immunity Are Associated with COPD Severity and Spirometric Disease Progression
    Eitan Halper-Stromberg, Jeong H. Yun, Margaret M. Parker, Ruth M. Tal-Singer, Amit Gaggar, Edwin K. Silverman, Sonia Leach, Russell P. Bowler, Peter J. Castaldi
    bioRxiv 193920; doi: https://doi.org/10.1101/193920 New Results
  • Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains
    Alexander Greninger, Pavitra Roychoudhury, Negar Makhsous, Derek Hanson, Jill Chase, Gerhard Krueger, Hong Xie, Meei-Li Huang, Lindsay Saunders, Dharam Ablashi, David M. Koelle, Linda Cook, Keith R. Jerome
    bioRxiv 193805; doi: https://doi.org/10.1101/193805 New Results
  • A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
    Sean D. Schoville, Yolanda H. Chen, Martin N. Andersson, Joshua B. Benoit, Anita Bhandari, Julia H. Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju M. Chen, Anna K. Childers, Christopher Childers, Olivier Christiaens, Justin Clements, Elena N. Elpidina, Patamarerk Engsontia, Markus Friedrich, Inmaculada Garcia-Robles, Richard A. Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Grynberg, Bernard Henrissat, Emily C. Jennings, Jeffery W. Jones, Megha Kalsi, Sher Afzal Khan, Abhishek Kumar, Fei Li, Vincent Lombard, Xingzhou Ma, Alexander Martynov, Nicholas J. Miller, Robert F. Mitchell, Monica Munoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen A. Panfilio, Yannick Pauchet, Lindsey C. Perkin, Marko Petek, Monica F. Poelchau, Eric Record, Joseph P. Rinehart, Hugh M. Robertson, Andrew J. Rosendale, Victor M. Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Elise M. Szuter, Gregg W. C. Thomas, Alex S. Torson, Iris M. Vargas Jentzsch, Matthew T. Weirauch, Ashley D. Yates, George D. Yocum, June-Sun Yoon, Stephen Richards
    bioRxiv 192641; doi: https://doi.org/10.1101/192641 New Results
  • Extensive Regulatory Changes in Genes Affecting Vocal and Facial Anatomy Separate Modern Humans from Neanderthals and Denisovans
    David Gokhman, Lily Agranat-Tamir, Genevieve Housman, Raquel Garcia-Perez, Malka Nissim-Rafinia, Swapan Mallick, Maria Nieves-Colón, Heng Li, Nadin Rohland, Songul Alpaslan-Roodenberg, Mario Novak, Hongcang Gu, Manuel Ferrando-Bernal, Pere Gelabert, Iddi Lipende, Ivanela Kondova, Ronald Bontrop, Ellen E. Quillen, Alexander Meissner, Anne C. Stone, Anne E. Pusey, Deus Mjungu, Leonid Kandel, Meir Liebergall, María E. Prada, Julio M. Vidal, Kay Prüfer, Johannes Krause, Benjamin Yakir, Svante Pääbo, Ron Pinhasi, Carles Lalueza-Fox, David Reich, Tomas Marques-Bonet, Eran Meshorer, Liran Carmel
    bioRxiv 106955; doi: https://doi.org/10.1101/106955 New Results
  • WHOLE GENOME BISULPHITE SEQUENCING USING THE ILLUMINA HISEQ X SYSTEM
    Masako Suzuki, Will Liao, Frank Wos, Andrew D Johnston, Justin DeGrazia, Jennifer Ishii, Toby Bloom, Michael C Zody, Soren Germer, John M Greally
    bioRxiv 193193; doi: https://doi.org/10.1101/193193 New Results
  • CUT&RUN: Targeted in situ genome-wide profiling with high efficiency for low cell numbers
    Peter J. Skene, Steven Henikoff
    bioRxiv 193219; doi: https://doi.org/10.1101/193219 New Results
  • Human Ageing Genomic Resources: 2018 Update
    Robi Tacutu, Daniel Thornton, Emily Johnson, Arie Budovsky, Diogo Barardo, Thomas Craig, Gilad Lehmann, Dmitri Toren, Vadim Fraifeld, Joao Pedro de Magalhaes
    bioRxiv 193326; doi: https://doi.org/10.1101/193326 New Results
  • Multi-platform​ ​ discovery​ ​ of​ ​ haplotype-resolved structural​ ​ variation​ ​ in​ ​ human​ ​ genomes
    Mark J.P. Chaisson, Ashley D. Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J. Gardner, Oscar Rodriguez, Li Guo, Ryan L. Collins, Xian Fan, Jia Wen, Robert E. Handsaker, Susan Fairley, Zev N. Kronenberg, Xiangmeng Kong, Fereydoun Hormozdiari, Dillon Lee, Aaron M. Wenger, Alex Hastie, Danny Antaki, Peter Audano, Harrison Brand, Stuart Cantsilieris, Han Cao, Eliza Cerveira, Chong Chen, Xintong Chen, Chen-Shan Chin, Zechen Chong, Nelson T. Chuang, Deanna M. Church, Laura Clarke, Andrew Farrell, Joey Flores, Timur Galeev, Gorkin David, Madhusudan Gujral, Victor Guryev, William Haynes-Heaton, Jonas Korlach, Sushant Kumar, Jee Young Kwon, Jong Eun Lee, Joyce Lee, Wan-Ping Lee, Sau Peng Lee, Patrick Marks, Karine Valud-Martinez, Sascha Meiers, Katherine M. Munson, Fabio Navarro, Bradley J. Nelson, Conor Nodzak, Amina Noor, Sofia Kyriazopoulou-Panagiotopoulou, Andy Pang, Yunjiang Qiu, Gabriel Rosanio, Mallory Ryan, Adrian Stutz, Diana C.J. Spierings, Alistair Ward, AnneMarie E. Welsch, Ming Xiao, Wei Xu, Chengsheng Zhang, Qihui Zhu, Xiangqun Zheng-Bradley, Goo Jun, Li Ding, Chong​ ​ Lek Koh, Bing Ren, Paul Flicek, Ken Chen, Mark B. Gerstein, Pui-Yan Kwok, Peter M. Lansdorp, Gabor Marth, Jonathan Sebat, Xinghua Shi, Ali Bashir, Kai Ye, Scott E. Devine, Michael Talkowski, Ryan E. Mills, Tobias Marschall, Jan Korbel, Evan E. Eichler, Charles Lee
    bioRxiv 193144; doi: https://doi.org/10.1101/193144 New Results

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