Genomics

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
Anil Raj, Sidney H. Wang, Heejung Shim, Arbel Harpak, Yang I. Li, Brett Englemann, Matthew Stephens, Yoav Gilad, Jonathan K. Pritchard

bioRxiv 031617; doi: https://doi.org/10.1101/031617

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Understanding biases in ribosome profiling experiments reveals signatures of translation dynamics in yeast
Jeffrey A. Hussmann, Stephanie Patchett, Arlen Johnson, Sara Sawyer, William H. Press

bioRxiv 027938; doi: https://doi.org/10.1101/027938

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Depletion of Abundant Sequences by Hybridization (DASH): Using Cas9 to remove unwanted high-abundance species in sequencing libraries and molecular counting applications
W Gu, ED Crawford, BD O’Donovan, MR Wilson, ED Chow, H Retallack, JL DeRisi

bioRxiv 031708; doi: https://doi.org/10.1101/031708

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Thermal age, cytosine deamination and the veracity of 8,000 year old wheat DNA from sediments
Logan Kistler, Oliver Smith, Roselyn Ware, Garry Momber, Richard Bates, Paul Garwood, Simon Fitch, Mark Pallen, Vincent Gaffney, Robin G. Allaby

bioRxiv 032060; doi: https://doi.org/10.1101/032060 Confirmatory Results

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MaGuS: a tool for map-guided scaffolding and quality assessment of genome assemblies
Mohammed-Amin Madoui, Carole Dossat, Léo d’Agata, Jan van Oeveren, Edwin van der Vossen, Jean-Marc Aury

bioRxiv 032045; doi: https://doi.org/10.1101/032045

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Direct estimate of the spontaneous mutation rate uncovers the effects of drift and recombination in the Chlamydomonas reinhardtii plastid genome
Rob W. Ness, Susanne A. Kraemer, Nick Colegrave, Peter D. Keightley

bioRxiv 031898; doi: https://doi.org/10.1101/031898

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RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships
Julie Nadel, Rodoniki Athanasiadou, Christophe Lemetre, N. Ari Wijetunga, Pilib Ó Broin, Hanae Sato, Zhengdong Zhang, Jeffrey Jeddeloh, Cristina Montagna, Aaron Golden, Cathal Seoighe, John M. Greally

bioRxiv 020545; doi: https://doi.org/10.1101/020545

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Marker-based estimates reveal significant non-additive effects in clonally propagated cassava (Manihot esculenta): implications for the prediction of total genetic value and the selection of varieties
Marnin D. Wolfe, Peter Kulakow, Ismail Y. Rabbi, Jean-Luc Jannink

bioRxiv 031864; doi: https://doi.org/10.1101/031864

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Natural selection reduces linked neutral divergence between distantly related species
Tanya N. Phung, Christian D. Huber, Kirk E. Lohmueller

bioRxiv 031740; doi: https://doi.org/10.1101/031740

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Health and population effects of rare gene knockouts in adult humans with related parents
V. Narasimhan, K.A. Hunt, D. Mason, C.L. Baker, K.J. Karczewski, M.R. Barnes, A.H. Barnett, C. Bates, S. Bellary, N.A. Bockett, K. Giorda, C.J. Griffiths, H. Hemingway, Z. Jia, M.A. Kelly, H.A. Khawaja, Monkol Lek, S. McCarthy, R. McEachan, K. Paigen, C. Parisinos, E. Sheridan, Laura Southgate, L. Tee, M. Thomas, Y. Xue, M. Schnall-Levin, P.M. Petkov, C. Tyler-Smith, E.R. Maher, R.C. Trembath, D.G. MacArthur, J. Wright, R. Durbin, D.A. van Heel

bioRxiv 031641; doi: https://doi.org/10.1101/031641

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Genomics

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