Genomics

Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata), a songbird model for immune function
Daniel J Newhouse, Erik K Hofmeister, Christopher N Balakrishnan

bioRxiv 103564; doi: https://doi.org/10.1101/103564

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MCF-7 breast cancer cell line PacBio generated transcriptome has ~300 novel transcribed regions, un-annotated in both RefSeq and GENCODE, and absent in the liver, heart and brain transcriptomes
Sandeep Chakraborty

bioRxiv 100974; doi: https://doi.org/10.1101/100974

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Longitudinal samples of bacterial genomes potentially bias evolutionary analyses
B.J. Arnold, W.P. Hanage

bioRxiv 103465; doi: https://doi.org/10.1101/103465 Contradictory Results

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Modelling haplotypes with respect to reference cohort variation graphs
Yohei Rosen, Jordan Eizenga, Benedict Paten

bioRxiv 101659; doi: https://doi.org/10.1101/101659

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European Flint reference sequences complement the maize pan-genome
Sandra Unterseer, Michael A. Seidel, Eva Bauer, Georg Haberer, Frank Hochholdinger, Nina Opitz, Caroline Marcon, Kobi Baruch, Manuel Spannagl, Klaus F.X. Mayer, Chris-Carolin Schön

bioRxiv 103747; doi: https://doi.org/10.1101/103747

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Spontaneous mutations and transmission distortions of genic copy number variants shape the standing genetic variation in Picea glauca
Atef Sahli, Isabelle Giguére, Jean Bousquet, John MacKay

bioRxiv 103796; doi: https://doi.org/10.1101/103796

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A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri
Mario Baumgart, Emanuel Barth, Aurora Savino, Marco Groth, Philipp Koch, Andreas Petzold, Ivan Arisi, Matthias Platzer, Manja Marz, Alessandro Cellerino

bioRxiv 103697; doi: https://doi.org/10.1101/103697

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Revealing the causative variant in Mendelian patient genomes without revealing patient genomes
Karthik A. Jagadeesh, David J. Wu, Johannes A. Birgmeier, Dan Boneh, Gill Bejerano

bioRxiv 103655; doi: https://doi.org/10.1101/103655

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Ultra-fast Identity by Descent Detection in Biobank-Scale Cohorts using Positional Burrows–Wheeler Transform
Ardalan Naseri, Xiaoming Liu, Shaojie Zhang, Degui Zhi

bioRxiv 103325; doi: https://doi.org/10.1101/103325

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The 4D Nucleome Project
Job Dekker, Andrew S. Belmont, Mitchell Guttman, Victor O. Leshyk, John T. Lis, Stavros Lomvardas, Leonid A. Mirny, Clodagh C. O’Shea, Peter J. Park, Bing Ren, Joan C. Ritland Politz, Jay Shendure, Sheng Zhong, The 4D Nucleome Network

bioRxiv 103499; doi: https://doi.org/10.1101/103499 Confirmatory Results

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Genomics

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