Genomics

Extrapolating histone marks across developmental stages, tissues, and species: an enhancer prediction case study
John A. Capra

bioRxiv 010710; doi: https://doi.org/10.1101/010710

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Long-read, whole-genome shotgun sequence data for five model organisms
Kristi E. Kim, Paul Peluso, Primo Babayan, P. Jane Yeadon, Charles Yu, William W. Fisher, Chen-Shan Chin, Nicole Rapicavoli, David R. Rank, Joachim Li, David E. A. Catcheside, Susan E. Celniker, Adam M. Phillippy, Casey M. Bergman, Jane M. Landolin

bioRxiv 008037; doi: https://doi.org/10.1101/008037

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The projection of a test genome onto a reference population and applications to humans and archaic hominins
Melinda A. Yang, Kelley Harris, Montgomery Slatkin

bioRxiv 008805; doi: https://doi.org/10.1101/008805

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Skip and bin: pervasive alternative splicing triggers degradation by nuclear RNA surveillance in fission yeast
Danny A. Bitton, Sophie R. Atkinson, Charalampos Rallis, Graeme C. Smith, David A. Ellis, Daniel C. Jeffares, Yuan Y.C. Chen, Michal Malecki, Sandra Codlin, Michal Lubas, Jean-François Lemay, François Bachand, Cristina Cotobal, Samuel Marguerat, Juan Mata, Torben Heick Jensen, Jürg Bähler

bioRxiv 010033; doi: https://doi.org/10.1101/010033

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Phinch: An interactive, exploratory data visualization framework for –Omic datasets
Holly M. Bik, Pitch Interactive Inc.

bioRxiv 009944; doi: https://doi.org/10.1101/009944

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Deep Sequencing revealed ‘Plant Like Transcripts’ in mosquito Anopheles culicifacies: an Evolutionary Puzzle
Punita Sharma, Swati Sharma, Ashwani Kumar Mishra, Tina Thomas, Tanwee Das De, Sonia Verma, Vandana Kumari, Suman Lata Rohilla, Namita Singh, Kailash C Pandey, Rajnikant Dixit

bioRxiv 010009; doi: https://doi.org/10.1101/010009

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Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality
Xia Shen, Jennifer De Jonge, Simon Forsberg, Mats Pettersson, Zheya Sheng, Lars Hennig, Örjan Carlborg

bioRxiv 004119; doi: https://doi.org/10.1101/004119

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The Drosophila Genome Nexus: a population genomic resource of 605 Drosophila melanogaster genomes, including 197 genomes from a single ancestral range population
Justin B. Lack, Charis M. Cardeno, Marc W. Crepeau, William Taylor, Russell B. Corbett-Detig, Kristian A. Stevens, Charles H. Langley, John E. Pool

bioRxiv 009886; doi: https://doi.org/10.1101/009886

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U2AF1 mutations alter splice site recognition in hematological malignancies
Janine O. Ilagan, Aravind Ramakrishnan, Brian Hayes, Michele E. Murphy, Ahmad S. Zebari, Philip Bradley, Robert K. Bradley

bioRxiv 001107; doi: https://doi.org/10.1101/001107

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Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus
Matthew D. MacManes, Michael B. Eisen

bioRxiv 009134; doi: https://doi.org/10.1101/009134

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Genomics

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