Genomics

Mutational signature decomposition with deep neural networks reveals origins of clock-like processes and hypoxia dependencies
Claudia Serrano Colome, Oleguer Canal Anton, Vladimir Seplyarskiy, Donate Weghorn

bioRxiv 2023.12.06.570467; doi: https://doi.org/10.1101/2023.12.06.570467 New Results

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The role of breakpoint mutations, supergene effects, and ancient nested rearrangements in the evolution of adaptive chromosome inversions in the yellow monkey flower, Mimulus guttatus
Leslie M Kollar, Lauren E Stanley, Sunil Kumar M Kenchanmane Raju, David Lowry, Chad E Niederhuth

bioRxiv 2023.12.06.570460; doi: https://doi.org/10.1101/2023.12.06.570460 New Results

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A maternal-to-zygotic-transition gene block on the zebrafish sex chromosome
Catherine A. Wilson, John H. Postlethwait

bioRxiv 2023.12.06.570431; doi: https://doi.org/10.1101/2023.12.06.570431 New Results

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Accurate and sensitive mutational signature analysis with MuSiCal
Hu Jin, Doga C Gulhan, Benedikt Geiger, Daniel Ben-Isvy, David Geng, Viktor Ljungstrom, Peter J Park

bioRxiv 2022.04.21.489082; doi: https://doi.org/10.1101/2022.04.21.489082 New Results

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SNPs in genes related to the repair of damage to DNA in clinical isolates of M. tuberculosis: a transversal and longitudinal approach
Damian Eduardo Pérez-Martínez, Roberto Zenteno-Cuevas

bioRxiv 2023.12.05.570269; doi: https://doi.org/10.1101/2023.12.05.570269 New Results

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Improving population scale statistical phasing with whole-genome sequencing data
Rick Wertenbroek, Robin Hofmeister, Ioannis Xenarios, Yann Thoma, Olivier Delaneau

bioRxiv 2023.12.07.570528; doi: https://doi.org/10.1101/2023.12.07.570528 New Results

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Consensus scHPF Identifies Cell Type-Specific Drug Responses in Glioma by Integrating Large-Scale scRNA-seq
Hanna Mendes Levitin, Wenting Zhao, Jeffrey N. Bruce, Peter Canoll, Peter A. Sims

bioRxiv 2023.12.05.570193; doi: https://doi.org/10.1101/2023.12.05.570193 New Results

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Sequencing, de novo assembly of Ludwigia plastomes, and comparative analysis within the Onagraceae family
F. Barloy-Hubler, A.-L. Le Gac, C. Boury, E. Guichoux, D. Barloy

bioRxiv 2023.10.20.563230; doi: https://doi.org/10.1101/2023.10.20.563230 New Results

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The genome regulatory landscape of Atlantic salmon liver through smoltification
Thomas N. Harvey, Gareth B. Gillard, Line L. Røsæg, Fabian Grammes, Øystein Monsen, Jon Olav Vik, Torgeir R. Hvidsten, Simen R. Sandve

bioRxiv 2023.08.16.553484; doi: https://doi.org/10.1101/2023.08.16.553484 New Results

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Spatial chromatin accessibility sequencing resolves high-order spatial interactions of epigenomic markers
Yeming Xie, Fengying Ruan, Yaning Li, Meng Luo, Chen Zhang, Zhichao Chen, Zhe Xie, Zhe Weng, Weitian Chen, Wenfang Chen, Yitong Fang, Yuxin Sun, Mei Guo, Juan Wang, Shouping Xu, Hongqi Wang, Chong Tang

bioRxiv 2022.04.21.489011; doi: https://doi.org/10.1101/2022.04.21.489011 New Results

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Genomics

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