Genomics

Darwin: A Hardware-acceleration Framework for Genomic Sequence Alignment
Yatish Turakhia, Kevin Jie Zheng, Gill Bejerano, William J. Dally

bioRxiv 092171; doi: https://doi.org/10.1101/092171 New Results
Genome urbanization: Clusters of topologically co-regulated genes delineate functional compartments in the genome of S. cerevisiae
Maria Tsochatzidou, Maria Malliarou, Nikolas Papanikolaou, Joaquim Roca, Christoforos Nikolaou

bioRxiv 064667; doi: https://doi.org/10.1101/064667 New Results
Machine learning identifies SNPs predictive of advanced coronary artery calcium in ClinSeq® and Framingham Heart Study cohorts
Cihan Oguz, Shurjo K Sen, Adam R Davis, Yi-Ping Fu, Christopher J O'Donnell, Gary H Gibbons

bioRxiv 102350; doi: https://doi.org/10.1101/102350 New Results
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
Hans J. Jansen, Michael Liem, Suzanne A. Jong-Raadsen, Sylvie Dufour, Finn-Arne Weltzien, William Swinkels, Alex Koelewijn, Arjan P. Palstra, Bernd Pelster, Herman P. Spaink, Guido E. Van den Thillart, Ron P. Dirks, Christiaan V. Henkel

bioRxiv 101907; doi: https://doi.org/10.1101/101907 New Results
A portable system for metagenomic analyses using nanopore-based sequencer and laptop computers can realize rapid on-site determination of bacterial compositions
Satomi Mitsuhashi, Kirill Kryukov, So Nakagawa, Junko S Takeuchi, Yoshiki Shiraishi, Koichiro Asano, Tadashi Imanishi

bioRxiv 101865; doi: https://doi.org/10.1101/101865 New Results
The effect of dietary ginseng polysaccharide supplementation on the immune responses involved in porcine milk-derived esRNAs
JIAJIE SUN, Liyuan Yao, Ting Chen, Qianyun Xi, Yongliang Zhang

bioRxiv 101592; doi: https://doi.org/10.1101/101592 New Results
Comparison and Characterisation of Mutation Calling from Whole Exome and RNA Sequencing Data for Liver and Muscle Tissue in Lactating Holstein Cows Divergent for Fertility
Bruce Moran, Stephen T Butler, Christopher J Creevey

bioRxiv 101733; doi: https://doi.org/10.1101/101733 New Results
Moving Beyond Clinical Risk Scores with a Mobile App for the Genomic Risk of Coronary Artery Disease
Evan D Muse, Nathan E Wineinger, Brian Schrader, Bhuvan Molparia, Emily G Spencer, Dale L Bodian, Ali Torkamani, Eric J Topol

bioRxiv 101519; doi: https://doi.org/10.1101/101519 New Results
The Drosophila Dosage Compensation Complex activates target genes by chromosome looping within the active compartment
Tamas Schauer, Yad Ghavi-Helm, Tom Sexton, Christian Albig, Catherine Regnard, Giacomo Cavalli, Eileen E M Furlong, Peter B Becker

bioRxiv 101634; doi: https://doi.org/10.1101/101634 New Results
Recurrent promoter mutations in melanoma are defined by an extended context-specific mutational signature
Johan Fredriksson, Kerryn Eliot, Stefan Filges, Anders Stahlberg, Erik Larsson

bioRxiv 069351; doi: https://doi.org/10.1101/069351 New Results

Genomics

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