Genomics

More than 16,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells
Laura Gomez-Valero, Christophe Rusniok, Danielle Carson, Sonia Mondino, Ana Elena Perez-Cobas, Monica Rolando, Shivani Pasricha, Sandra Reuter, Jasmin Demirtas, Johannes Crumbach, Stephane Descorps-Declere, Elizabeth L Hartland, Sophie Jarraud, Gordon Dougan, Gunnar N Schroeder, Gad Frankel, Carmen Buchrieser

bioRxiv 350777; doi: https://doi.org/10.1101/350777 New Results
Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle
Wanxin Wang, Felipe Vilella, Inmaculada Moreno, Wenying Pan, Carlos Simon, Stephen R Quake

bioRxiv 350538; doi: https://doi.org/10.1101/350538 New Results
Gut microbiome recovery after antibiotic usage is mediated by specific bacterial species
Tannistha Nandi, Ivor Russel Lee, Tarini Ghosh, Amanda Hui Qi Ng, Kern Rei Chng, Chenhao Li, Yi Han Tan, David Lye, Timothy Barkham, Swaine Chen, Yunn-Hwen Gan, Barnaby Young, Niranjan Nagarajan

bioRxiv 350470; doi: https://doi.org/10.1101/350470 New Results
LADL: Light-activated dynamic looping for endogenous gene expression control
Mayuri Rege, Ji Hun Kim, Jacqueline Valeri, Margaret Dunagin, Aryeh Metzger, Wanfeng Gong, Jonathan Beagan, Arjun Raj, Jennifer E Phillips-Cremins

bioRxiv 349340; doi: https://doi.org/10.1101/349340 New Results
Highly accelerated rates of heritable large-scale mutations under prolonged exposure to a metal mixture of copper and nickel
Frédéric Chain, Jullien Flynn, James Bull, Melania Cristescu

bioRxiv 349563; doi: https://doi.org/10.1101/349563 New Results
Emergent populations derived with unsupervised learning of human whole genomes
eMalick G Njie

bioRxiv 329789; doi: https://doi.org/10.1101/329789 New Results
Turning vice into virtue: Using Batch-Effects to Detect Errors in Large Genomic Datasets
Fabrizio Mafessoni, Rashmi Prasad B, Leif Groop, Ola Hansson, Kay Pruefer

bioRxiv 189670; doi: https://doi.org/10.1101/189670 New Results
Colonic Epithelial miR-31 Associates with the Development of Crohn's Phenotypes
Benjamin P Keith, Jasmine B Barrow, Nevzat Kazgan, Neil D Shah, Greg R Gipson, Wendy A Pitman, Shruti J Saxena, Elisabeth A Wolber, Matthew S Schaner, Michelle Hoffner O'Connor, Omar K Tradd, Matthew Kanke, Takahiko Toyonaga, Nicole Chaumont, Timothy S Sadiq, Mark J Koruda, Paul A Cotney, Nancy Allbritton, Dimitri G Trembath, Francisco Sylvester, Terrence S Furey, Praveen Sethupathy, Shehzad Z Sheikh

bioRxiv 307561; doi: https://doi.org/10.1101/307561 New Results
Feasibility of constructing multi-dimensional genomic maps of juvenile idiopathic arthritis
James N. Jarvis, Lisha Zhu, Kaiyu Jiang, Laiping Wong, Michael J Buck, Yanmin Chen, Halima Moncrief, Laura A Macintosh, Tao Liu, Xiaoyun Sing, Daofeng Li, Ting Wang, Kathleen M O'Neil

bioRxiv 349811; doi: https://doi.org/10.1101/349811 New Results
Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562
Bo Zhou, Steve S. Ho, Stephanie U. Greer, Xiaowei Zhu, John M. Bell, Joseph G. Arthur, Noah Spies, Xianglong Zhang, Seunggyu Byeon, Reenal Pattni, Noa Ben-Efraim, Michael S. Haney, Rajini R. Haraksingh, Hanlee P. Ji, Giltae Song, Dimitri Perrin, Wing H. Wong, Alexej Abyzov, Alexander E. Urban

bioRxiv 192344; doi: https://doi.org/10.1101/192344 New Results

Genomics

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