Genomics

Systematic Discovery of Conservation States for Single-Nucleotide Annotation of the Human Genome
Adriana C Sperlea, Jason Ernst

bioRxiv 262097; doi: https://doi.org/10.1101/262097 New Results
A new targeted capture method using bacterial artificial chromosome (BAC) libraries as baits for sequencing relatively large genes
Kae Koganebuchi, Takashi Gakuhari, Hirohiko Takeshima, Kimitoshi Sato, Kiyotaka Fujii, Toshihiro Kumabe, Satoshi Kasagi, Takehiro Sato, Atsushi Tajima, Hiroki Shibata, Motoyuki Ogawa, Hiroki Oota

bioRxiv 302760; doi: https://doi.org/10.1101/302760 New Results
integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth
Haley R. Eidem, Jacob L. Steenwyk, Jennifer H. Wisecaver, John A. Capra, Patrick Abbot, Antonis Rokas

bioRxiv 302612; doi: https://doi.org/10.1101/302612 New Results
Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by ancestry tracts
Maeva Leitwein, Pierre-Alexandre Gagnaire, Erick Desmarais, Patrick Berrebi, Bruno GUINAND

bioRxiv 302380; doi: https://doi.org/10.1101/302380 New Results
Rapid Identification of Stable Clusters in Bacterial Populations Using the Adjusted Wallace Coefficient
Dillon OR Barker, Joao Andre Carrico, Peter Kruczkiewicz, Federica Palma, Mirko Rossi, Eduardo N Taboada

bioRxiv 299347; doi: https://doi.org/10.1101/299347 New Results
Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation
Alexis Vandenbon, Yutaro Kumagai, Yutaka Suzuki, Kenta Nakai

bioRxiv 066472; doi: https://doi.org/10.1101/066472 New Results
Consensus assessment of the contamination level of publicly available cyanobacterial genomes
Luc Cornet, Loic Meunier, Mick Van Vlierberghe, Raphael R. Leonard, Benoit Durieu, Yannick Lara, Agnieszka Misztak, Damien Sirjacobs, Emmanuelle J. Javaux, Herve Philippe, Annick Wilmotte, Denis Baurain

bioRxiv 301788; doi: https://doi.org/10.1101/301788 New Results
mHi-C: robust leveraging of multi-mapping reads in Hi-C analysis
Ye Zheng, Ferhat Ay, Sunduz Keles

bioRxiv 301705; doi: https://doi.org/10.1101/301705 New Results
Complementary information on single nucleotide variants, INDELs and functional translocations can be obtained with RNAseq using different library preparations
Riccardo Panero, Maddalena Arigoni, Martina Olivero, Francesca Cordero, Alessandro Weisz, Marco Beccuti, Maria Flavia Direnzo, Raffaele A Calogero

bioRxiv 301010; doi: https://doi.org/10.1101/301010 New Results
Whole genome sequence analysis of 91 Salmonella Enteritidis isolates from mice caught on poultry farms in the mid 1990s
Jean Guard, Guojie Cao, Yan Luo, Joseph D Baugher, Sherrill Davison, Kuan Yao, Maria Hoffmann, Guodong Zhang, Rebecca L Bell, Jie Zheng, Eric Brown, Marc W Allard

bioRxiv 301432; doi: https://doi.org/10.1101/301432 New Results

Genomics

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