Genomics

TRACKing Tandem Repeats: a customizable pipeline for identification and cross-species comparisons
Carolina de Lima Adam, Joana L Rocha, Peter H Sudmant, Rori Rohlfs

bioRxiv 2024.09.27.615531; doi: https://doi.org/10.1101/2024.09.27.615531 New Results

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Whole blood transcriptome profile identifies motor neurone disease (MND) RNA biomarker signatures
Sulev Kõks, Karin Rallmann, Mari Muldmaa, Jack Price, Abigail L Pfaff, Pille Taba

bioRxiv 2024.09.27.615372; doi: https://doi.org/10.1101/2024.09.27.615372 New Results

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Sequencing, de novo assembly of Ludwigia plastomes, and comparative analysis within the Onagraceae family
F. Barloy-Hubler, A.-L. Le Gac, C. Boury, E. Guichoux, D. Barloy

bioRxiv 2023.10.20.563230; doi: https://doi.org/10.1101/2023.10.20.563230 New Results

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No evidence of immunosurveillance in mutation-hotspot driven clonal haematopoiesis
Barbara Walkowiak, Hamish AJ MacGregor, Jamie R Blundell

bioRxiv 2024.09.27.615394; doi: https://doi.org/10.1101/2024.09.27.615394 New Results

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Characterization of hairpin loops and cruciforms across 118,065 genomes spanning the tree of life
Nikol Chantzi, Camille Moeckel, Candace S. Y Chan, Akshatha Nayak, Guliang Wang, Ioannis Mouratidis, Dionysios Chartoumpekis, Karen M. Vasquez, Ilias Georgakopoulos-Soares

bioRxiv 2024.09.29.615628; doi: https://doi.org/10.1101/2024.09.29.615628 New Results

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Untargeted CUT&Tag and BG4 CUT&Tag are both enriched at G-quadruplexes and accessible chromatin
Matthew Thompson, Alicia Byrd

bioRxiv 2024.09.26.615263; doi: https://doi.org/10.1101/2024.09.26.615263 New Results

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Alternative splicing of transposable elements in human breast cancer
Alex Nesta, Diogo F. T. Veiga, Jacques Banchereau, Olga Anczukow, Christine R. Beck

bioRxiv 2024.09.26.615242; doi: https://doi.org/10.1101/2024.09.26.615242 New Results

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Somatic mutant selection is altered by prior NOTCH1 mutation in aging esophageal epithelium
Charlotte King, Emilie Abby, Joanna C. Fowler, Irina Abnizova, Roshan K. Sood, Swee Hoe Ong, Michael W. J. Hall, Faye Lynch-Williams, Benjamin A. Hall, Philip H. Jones

bioRxiv 2024.09.26.615123; doi: https://doi.org/10.1101/2024.09.26.615123 New Results

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Quantitative omnigenic model discovers interpretable genome-wide associations
Natália Ružičková, Michal Hledík, Gašper Tkačik

bioRxiv 2024.02.01.578486; doi: https://doi.org/10.1101/2024.02.01.578486 New Results

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KaryoTap Enables Aneuploidy Detection in Thousands of Single Human Cells
Joseph C. Mays, Sally Mei, Manjunatha Kogenaru, Helberth M. Quysbertf, Nazario Bosco, Xin Zhao, Joy J. Bianchi, Aleah Goldberg, Gururaj Rao Kidiyoor, Liam J. Holt, David Fenyö, Teresa Davoli

bioRxiv 2023.09.08.555746; doi: https://doi.org/10.1101/2023.09.08.555746 New Results

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Genomics

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