Genomics

Genome-wide profiling of DNA repair identifies higher-order coordination in single cells
Kim L. de Luca, Pim M. J. Rullens, Gaëlle Legube, Jop Kind

bioRxiv 2023.05.10.540169; doi: https://doi.org/10.1101/2023.05.10.540169 New Results

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AMLdb: A comprehensive multi-omics platform to understand the pathogenesis and discover biomarkers for acute myeloid leukemia
Keerthana Vinod Kumar, Ambuj Kumar, Kavita Kundal, Avik Sengupta, Kunjulakshmi R, Mayilaadumveettil Nishana, Rahul Kumar

bioRxiv 2023.05.19.541403; doi: https://doi.org/10.1101/2023.05.19.541403 New Results

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Fibroblasts as an in vitro model of circadian genetic and genomic studies
Marcelo Francia, Merel Bot, Toni Boltz, Juan F. De la Hoz, Marco Boks, René Kahn, Roel Ophoff

bioRxiv 2023.05.19.541494; doi: https://doi.org/10.1101/2023.05.19.541494 New Results

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Unsupervised Machine Learning Identifies Chromatin Accessibility Regulatory Networks that Define Cell State Transitions in Pluripotency
Timothy D. Arthur, Jennifer P. Nguyen, Agnieszka D’Antonio-Chronowska, Hiroko Matsui, Nayara Silva, Isaac N. Joshua, iPSCORE Consortium, William W. Young Greenwald, Matteo D’Antonio, Martin F. Pera, Kelly A. Frazer

bioRxiv 2023.05.20.541447; doi: https://doi.org/10.1101/2023.05.20.541447 New Results

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Telomere-to-telomere genome of the model plant Physcomitrium patens
Guiqi Bi, Shijun Zhao, Jiawei Yao, Huan Wang, Mengkai Zhao, Yuanyuan Sun, Xueren Hou, Yuling Jiao, Yingxin Ma, Jianbin Yan, Junbiao Dai

bioRxiv 2023.05.19.541548; doi: https://doi.org/10.1101/2023.05.19.541548 New Results

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HEMU: an integrated Andropogoneae comparative genomics database and analysis platform
Yuzhi Zhu, Zijie Wang, Zanchen Zhou, Yuting Liu, Junpeng Shi

bioRxiv 2023.05.19.541421; doi: https://doi.org/10.1101/2023.05.19.541421 New Results

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MyeloDB: A multi-omics resource for Multiple Myeloma
Ambuj Kumar, Keerthana Vinod Kumar, Kavita Kundal, Avik Sengupta, Kunjulakshmi R, Rahul Kumar

bioRxiv 2023.05.18.541396; doi: https://doi.org/10.1101/2023.05.18.541396 New Results

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Oncogenic reactivation of young L1s is a hallmark of colon cancer
Devin Neu, Stevephen Hung, Cynthia F. Bartels, Zachary J. Faber, Katreya Lovrenert, W. Dean Pontius, Laura Morgan, Maharshi Chakraborty, Will Liao, Diana Chin, Ellen S. Hong, Jeremy Gray, Victor Moreno, Matthew Kalady, Ulrike Peters, Berkley Gryder, Richard C. Sallari, Peter C. Scacheri

bioRxiv 2023.05.17.541189; doi: https://doi.org/10.1101/2023.05.17.541189 New Results

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Conserving a threatened North American walnut: a chromosome-scale reference genome for butternut (Juglans cinerea)
Cristopher R. Guzman-Torres, Emily Trybulec, Hannah LeVasseur, Harshita Akella, Maurice Amee, Emily Strickland, Nicole Pauloski, Martin Williams, Jeanne Romero-Severson, Sean Hoban, Keith Woeste, Carolyn C. Pike, Karl C. Fetter, Cynthia N. Webster, Michelle L. Neitzey, Rachel J. O’Neill, Jill L. Wegrzyn

bioRxiv 2023.05.12.539246; doi: https://doi.org/10.1101/2023.05.12.539246 New Results

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Nucleosome reorganisation in breast cancer tissues
Divya R. Jacob, Wilfried M. Guiblet, Hulkar Mamayusupova, Mariya Shtumpf, Luminita Ruje, Isabella Ciuta, Svetlana Gretton, Clark Correa, Emily Dellow, Shivam P. Agrawal, Navid Shafiei, Anastasija Drobysevskaja, Chris M. Armstrong, Jonathan D. G. Lam, Yevhen Vainshtein, Christopher T. Clarkson, Graeme J. Thorn, Kai Sohn, Madapura M. Pradeepa, Sankaran Chandrasekharan, Greg N. Brooke, Elena Klenova, Victor B. Zhurkin, Vladimir B. Teif

bioRxiv 2023.04.17.537031; doi: https://doi.org/10.1101/2023.04.17.537031 New Results

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Genomics

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