Genomics

Robust single-cell DNA methylome profiling with snmC-seq2
Chongyuan Luo, Angeline Rivkin, Jingtian Zhou, Justin P Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, Joseph R Nery, Antonio Pinto-Duarte, Brian Bui, Conor Fitzpatrick, Carolyn O'Connor, Seth Ruga, Marc E Van Eden, David A Davis, Deborah C Mash, M. Margarita Behrens, Joseph R Ecker

bioRxiv 294355; doi: https://doi.org/10.1101/294355 New Results
Strategies for quantitative RNA-seq analyses among closely related species
Swati Parekh, Beate Vieth, Christoph Ziegenhain, Wolfgang Enard, Ines Hellmann

bioRxiv 297408; doi: https://doi.org/10.1101/297408 New Results
Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi
Elizabeth M Batty, Suwittra Chaemchuen, Stuart D Blacksell, Daniel H Paris, Rory Bowden, Caroline Chan, Ramkumar Lachumanan, Nicholas Day, Peter Donnelly, Swaine L Chen, Jeanne Salje

bioRxiv 280958; doi: https://doi.org/10.1101/280958 New Results
Epigenetic Age-Predictor for Mice based on Three CpG Sites
Yang Han, Monika Eipel, Vadim Sakk, Bertien Dethmers-Ausema, Gerald de Haan, Hartmut Geiger, Wolfgang Wagner

bioRxiv 296525; doi: https://doi.org/10.1101/296525 New Results
Integrating Predicted Transcriptome From Multiple Tissues Improves Association Detection
Alvaro N Barbeira, Milton D Pividori, Jiamao Zheng, Heather E Wheeler, Dan L Nicolae, Hae Kyung Im

bioRxiv 292649; doi: https://doi.org/10.1101/292649 New Results
Quantitative proteomics identification of seminal fluid proteins in male Drosophila melanogaster
Irem Sepil, Ben R Hopkins, Rebecca Dean, Marie-Laetitia Thezenas, Philip D Charles, Rebecca Konietzny, Roman Fischer, Benedikt M Kessler, Stuart Wigby

bioRxiv 296491; doi: https://doi.org/10.1101/296491 New Results
Detection and removal of barcode swapping in single-cell RNA-seq data
Jonathan A. Griffiths, Arianne C. Richard, Karsten Bach, Aaron T.L. Lun, John C. Marioni

bioRxiv 177048; doi: https://doi.org/10.1101/177048 New Results
The impact of endogenous retroviruses on nuclear organization and gene expression
Ramya Raviram, Pedro Rocha, Vincent Luo, Emily Swanzey, Emily Miraldi, Edward Chuong, Cedric Feschotte, Richard Bonneau, Jane Skok

bioRxiv 295329; doi: https://doi.org/10.1101/295329 New Results
Emergence and global spread of a multidrug-resistant, community-associated MRSA lineage from the Indian subcontinent
Eike J Steinig, Sebastian Duchene, D. Ashley Robinson, Stefan Monecke, Maho Yokoyama, Maisem Laabei, Peter Slickers, Patiyan Andersson, Deborah Williamson, Angela Kearns, Richard Goering, Elizabeth Dickson, Ralf Ehricht, Margaret Ip, Matthew VN O'Sullivan, Geoffrey W Coombs, Andreas Petersen, Grainne Brennan, Anna C Shore, David C Coleman, Annalisa Pantosti, Herminia de Lencastre, Henrik Westh, Nobumichi Kobayashi, Helen Heffernan, Birgit Strommenger, Franziska Layer, Stefan Weber, Hege Aamot, Leila Skakni, Sharon J Peacock, Derek Sarovich, Philip Giffard, Simon Harris, Julian Parkhill, Ruth C Massey, Matthew TG Holden, Stephen D Bentley, Steven YC Tong

bioRxiv 233395; doi: https://doi.org/10.1101/233395 New Results
Genome variants associated with RNA splicing variation in bovine are extensively shared between tissues
Ruidong Xiang, Ben J. Hayes, Christy J. Vander Jagt, Iona M. MacLeod, Majid Khansefid, Phil J. Bowman, Zehu Yuan, Claire P. Prowse-Wilkins, Coralie M. Reich, Brett A. Mason, Josie B. Garner, Leah C. Marett, Yizhou Chen, Sunduimijid Bolormaa, Hans D. Daetwyler, Amanda J. Chamberlain, Michael E. Goddard

bioRxiv 220251; doi: https://doi.org/10.1101/220251 New Results

Genomics

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