Genomics

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
John Lees, Bart Ferwerda, Philip HC Kremer, Nicole E Wheeler, Mercedes Valls Serón, Nicholas J Croucher, Rebecca A Gladstone, Hester J Bootsma, Nynke Rots, Alienke J Wijmega-Monsuur, Elisabeth AM Sanders, Krzysztof Trzciński, Anne L Wyllie, Aeilko H Zwinderman, Leonard H van den Berg, Wouter van Rheenen, Jan H Veldink, Zitta B Harboe, Lene F Lundbo, Lisette CPGM de Groot, Natasja M van Schoor, Nathalie van der Velde, Lars H Ängquist, Thorkild IA Sørensen, Ellen A Nohr, Alexander J Mentzer, Tara C Mills, Julian C Knight, Mignon du Plessis, Susan Nzenze, Jeffrey N Weiser, Julian Parkhill, Shabir Madhi, Thomas Benfield, Anne von Gottberg, Arie van der Ende, Matthijs C Brouwer, Jeffrey C Barrett, Stephen D Bentley, Diederik van de Beek

bioRxiv 386078; doi: https://doi.org/10.1101/386078 New Results
Genome Wide Study of Tardive Dyskinesia in Schizophrenia
Max Lam, Keane Lim, Jenny Tay, Nina Karlsson, Smita N Deshpande, B K Thelma, Norio Ozaki, Toshiya Inada, Kang Sim, Siow-Ann Chong, Jianjun Liu, Jimmy Lee

bioRxiv 386227; doi: https://doi.org/10.1101/386227 New Results
One species, two genomes: A critical assessment of inter isolate variation and identification of assembly incongruence in Haemonchus contortus
Jeff Wintersinger, Grace M Mariene, James Wasmuth

bioRxiv 384008; doi: https://doi.org/10.1101/384008 New Results
The genetic architecture of target-site resistance to pyrethroid insecticides in the African malaria vectors Anopheles gambiae and Anopheles coluzzii
Chris S Clarkson, Alistair Miles, Nicholas J Harding, David Weetman, Dominic Kwiatkowski, Martin Donnelly, The <I>Anopheles gambiae</I> 1000 Genomes Consortium

bioRxiv 323980; doi: https://doi.org/10.1101/323980 New Results
Response to Shah et al: Using high-resolution variant frequencies empowers clinical genome interpretation and enables investigation of genetic architecture
Nicola Whiffin, Angharad Roberts, Eric V Minikel, Zach Zappala, Roddy Walsh, Anne H O'Donnell-Luria, Konrad Karczewski, Steven M Harrison, Kate L Thomson, Helen Sage, Alexander Y Ing, Paul J R Barton, Stuart A Cook, Daniel G MacArthur, James S Ware

bioRxiv 384271; doi: https://doi.org/10.1101/384271 Contradictory Results
Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis
Akshaya Ramesh, Sara Nakielny, Jennifer Hsu, Mary Kyohere, Oswald Byaruhanga, Charles de Bourcy, Rebecca Egger, Boris Dimitrov, Yun-Fang Juan, Jonathan Sheu, James Wang, Katrina Kalantar, Charles Langelier, Theodore Ruel, Arthur Mpimbaza, Michael R Wilson, Philip J Rosenthal, Joseph L DeRisi

bioRxiv 385005; doi: https://doi.org/10.1101/385005 New Results
A combination of transcription factors mediates inducible interchromosomal pairing
Seungsoo Kim, Maitreya Dunham, Jay Shendure

bioRxiv 385047; doi: https://doi.org/10.1101/385047 New Results
Time-resolved mapping of genetic interactions to model rewiring of signaling pathways
Florian Heigwer, Christian Scheeder, Thilo Miersch, Barbara Schmitt, Claudia Blass, Mischan Vali Pour-Jamnani, Michael Boutros

bioRxiv 384800; doi: https://doi.org/10.1101/384800 New Results
The Genomic Basis of Arthropod Diversity
Gregg W. C. Thomas, Elias Dohmen, Daniel S. T. Hughes, Shwetha C. Murali, Monica Poelchau, Karl Glastad, Clare A. Anstead, Nadia A. Ayoub, Phillip Batterham, Michelle Bellair, Gretta J Binford, Hsu Chao, Yolanda H Chen, Christopher Childers, Huyen Dinh, HarshaVardhan Doddapaneni, Jian J Duan, Shannon Dugan, Lauren A Esposito, Markus Friedrich, Jessica Garb, Robin B. B Gasser, Michael A. D. Goodisman, Dawn E Gundersen-Rindal, Yi Han, Alfred M Handler, Masatsugu Hatakeyama, Lars Hering, Wayne B Hunter, Panagiotis Ioannidis, Joy C Jayaseelan, Divya Kalra, Abderrahman Khila, Pasi K Korhonen, Carol Eunmi Lee, Sandra L Lee, Yiyuan Li, Amelia R.I. Lindsey, Georg Mayer, Alistair P McGregor, Duane D. McKenna, Bernhard Misof, Mala Munidasa, Monica Munoz-Torres, Donna M Muzny, Oliver Niehuis, Nkechinyere Osuji-Lacy, Subba R. Palli, Kristen A. Panfilio, Matthias Pechmann, Trent Perry, Ralph S. Peters, Helen C Poynton, Nikola-Michael Prpic, Jiaxin Qu, Dorith Rotenberg, Coby Schal, Sean D Schoville, Erin D Scully, Evette Skinner, Daniel B Sloan, Richard Stouthamer, Michael R Strand, Nikolaus U Szucsich, Asela Wijeratne, Neil D Young, Eduardo E Zattara, Joshua B Benoit, Evgeny M Zdobnov, Michael E Pfrender, Kevin J Hackett, John H Werren, Kim C Worley, Richard A Gibbs, Ariel D Chipman, Robert M Waterhouse, Erich Bornberg-Bauer, Matthew W Hahn, Stephen Richards

bioRxiv 382945; doi: https://doi.org/10.1101/382945 New Results
Signals of variation in human mutation rate at multiple levels of sequence context
Rachael C Aikens, Kelsey E Johnson, Benjamin F Voight

bioRxiv 385096; doi: https://doi.org/10.1101/385096 New Results

Genomics

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