Genomics

Genome-wide analysis of chalcone synthase (CHS) family from eggplant (Solanum melongena L.) in flavonoid biosynthetic pathway and expression pattern in response to heat stress
Xuexia Wu, Shengmei Zhang, Xiaohui Liu, Jing Shang, Aidong Zhang, Zongwen Zhu, Dingshi Zha

bioRxiv 863696; doi: https://doi.org/10.1101/863696 Confirmatory Results

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Multiplexed single-cell autism modeling reveals convergent mechanisms altering neuronal differentiation
Matthew A. Lalli, Denis Avey, Joseph D. Dougherty, Jeffrey Milbrandt, Robi D. Mitra

bioRxiv 862680; doi: https://doi.org/10.1101/862680 New Results

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Exploring the Changing Landscape of Cell-to-Cell Variation After CTCF Knockdown via Single Cell RNA-seq
Wei Wang, Gang Ren, Ni Hong, Wenfei Jin

bioRxiv 862847; doi: https://doi.org/10.1101/862847 New Results

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Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358
Shujun Ou, Jianing Liu, Kapeel M. Chougule, Arkarachai Fungtammasan, Arun Seetharam, Joshua Stein, Victor Llaca, Nancy Manchanda, Amanda M. Gilbert, Xuehong Wei, Chen-Shan Chin, David E. Hufnagel, Sarah Pedersen, Samantha Snodgrass, Kevin Fengler, Margaret Woodhouse, Brian P. Walenz, Sergey Koren, Adam M. Phillippy, Brett Hannigan, R. Kelly Dawe, Candice N. Hirsch, Matthew B. Hufford, Doreen Ware

bioRxiv 858365; doi: https://doi.org/10.1101/858365 New Results

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The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
Brigitte T. Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi Hazarika, Jane Grimwood, Sujan Mamidi, Jerry Jenkins, Paul P. Grabowski, Avinash Sreedasyam, Shengqiang Shu, Kerrie Barry, Kathleen Lail, Catherine Adam, Anna Lipzen, Rotem Sorek, Dave Kudrna, Jayson Talag, Rod Wing, David W. Hall, Gerald A. Tuskan, Jeremy Schmutz, Frank Johannes, Robert J. Schmitz

bioRxiv 862623; doi: https://doi.org/10.1101/862623 New Results

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Distinctive epigenomic alterations in NF1-deficient cutaneous and plexiform neurofibromas drive differential MKK/P38 signaling
Jamie L. Grit, Benjamin K. Johnson, Patrick S. Dischinger, Curt J. Essenburg, Stacy Campbell, Tim J. Triche Jr., Carrie R. Graveel, Matthew R. Steensma

bioRxiv 833467; doi: https://doi.org/10.1101/833467 New Results

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Gene regulatory effects of a large chromosomal inversion in highland maize
Taylor Crow, James Ta, Saghi Nojoomi, M. Rocío Aguilar-Rangel, Jorge Vladimir Torres Rodrǵuez, Daniel Gates, Ruben Rellan-Alvarez, Ruairidh Sawers, Daniel Runcie

bioRxiv 861583; doi: https://doi.org/10.1101/861583 New Results

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Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with repressed chromatin compartment and reveals transcription dynamics
Alexey A. Gavrilov, Anastasiya A. Zharikova, Aleksandra A. Galitsyna, Artem V. Luzhin, Natalia M. Rubanova, Arkadiy K. Golov, Nadezhda V. Petrova, Maria D. Logacheva, Omar L. Kantidze, Sergey V. Ulianov, Mikhail D. Magnitov, Andrey A. Mironov, Sergey V. Razin

bioRxiv 859504; doi: https://doi.org/10.1101/859504 New Results

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Conserved and specific genomic features of endogenous polydnaviruses revealed by whole genome sequencing of two ichneumonid wasps
Fabrice Legeai, Bernardo F. Santos, Stéphanie Robin, Anthony Bretaudeau, Rebecca B. Dikow, Claire Lemaitre, Véronique Jouan, Marc Ravallec, Jean-Michel Drezen, Denis Tagu, Gabor Gyapay, Xin Zhou, Shanlin Liu, Bruce A. Webb, Seán G. Brady, Anne-Nathalie Volkoff

bioRxiv 861310; doi: https://doi.org/10.1101/861310 New Results

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Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens
Atray Dixit, Olena Kuksenko, David Feldman, Aviv Regev

bioRxiv 861443; doi: https://doi.org/10.1101/861443 New Results

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Genomics

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