Genomics

Areca catechu-(Betel-nut)-induced whole transcriptome changes associated with diabetes, obesity and metabolic syndrome in a human monocyte cell line
Shirleny Cardoso, B. William Ogunkolade, Rob Lowe, Emanuel Savage, Charles A Mein, Barbara J Boucher, Graham A Hitman

bioRxiv 2020.08.03.233932; doi: https://doi.org/10.1101/2020.08.03.233932 New Results

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Nanopore direct RNA sequencing detects differential expression between human cell populations
Josie Gleeson, Tracy A. Lane, Paul J Harrison, Wilfried Haerty, Michael B Clark

bioRxiv 2020.08.02.232785; doi: https://doi.org/10.1101/2020.08.02.232785 New Results

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PAN-INDIA 1000 SARS-CoV-2 RNA Genome Sequencing Reveals Important Insights into the Outbreak
Arindam Maitra, Sunil Raghav, Ashwin Dalal, Farhan Ali, Vanessa Molin Paynter, Dhiraj Paul, Nidhan K Biswas, Arup Ghosh, Kunal Jani, Sreedhar Chinnaswamy, Sanghamitra Pati, Arvind Sahu, Debashis Mitra, Manoj Kumar Bhat, Satyajit Mayor, Apurva Sarin, The PAN-INDIA 1000 SARS-CoV-2 RNA Genome Sequencing Consortium, Yogesh S. Sauche, Aswin Sai Narain Seshasayee, Dasaradhi Palakodeti, Murali D. Bashyam, Ajay Parida, Saumitra Das

bioRxiv 2020.08.03.233718; doi: https://doi.org/10.1101/2020.08.03.233718 New Results

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High-Spatial-Resolution Multi-Omics Atlas Sequencing of Mouse Embryos via Deterministic Barcoding in Tissue
Yang Liu, Mingyu Yang, Yanxiang Deng, Graham Su, Archibald Enninful, Cindy C. Guo, Toma Tebaldi, Di Zhang, Dongjoo Kim, Zhiliang Bai, Eileen Norris, Alisia Pan, Jiatong Li, Yang Xiao, Stephanie Halene, Rong Fan

bioRxiv 2020.08.01.232496; doi: https://doi.org/10.1101/2020.08.01.232496 Withdrawn

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Generative probabilistic biological sequence models that account for mutational variability
Eli N. Weinstein, Debora S. Marks

bioRxiv 2020.07.31.231381; doi: https://doi.org/10.1101/2020.07.31.231381 New Results

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High-Spatial-Resolution Multi-Omics Atlas Sequencing of Mouse Embryos via Deterministic Barcoding in Tissue
Yang Liu, Mingyu Yang, Yanxiang Deng, Graham Su, Archibald Enninful, Cindy C. Guo, Toma Tebaldi, Di Zhang, Dongjoo Kim, Zhiliang Bai, Eileen Norris, Alisia Pan, Jiatong Li, Yang Xiao, Stephanie Halene, Rong Fan

bioRxiv 788992; doi: https://doi.org/10.1101/788992 New Results

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The genome of low-chill Chinese plum ‘Sanyueli’ (Prunus salicina Lindl.) provides insights into the regulation of chilling requirement of flower bud
Zhi-Zhen Fang, Kui Lin-Wang, He Dai, Dan-Rong Zhou, Cui-Cui Jiang, Richard V. Espley, Yan-Juan Lin, Shao-Lin Pan, Xin-Fu Ye

bioRxiv 2020.07.31.193243; doi: https://doi.org/10.1101/2020.07.31.193243 New Results

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Hybrid capture-based sequencing enables unbiased recovery of SAR-CoV-2 genomes from fecal samples and characterization of the dynamics of intra-host variants
Yi Xu, Lu Kang, Zijie Shen, Xufang Li, Weili Wu, Wentai Ma, Chunxiao Fang, Fengxia Yang, Xuan Jiang, Sitang Gong, Li Zhang, Mingkun Li

bioRxiv 2020.07.30.230102; doi: https://doi.org/10.1101/2020.07.30.230102 New Results

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Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes
Julia V. Halo, Amanda L. Pendleton, Feichen Shen, Aurélien J. Doucet, Thomas Derrien, Christophe Hitte, Laura E. Kirby, Bridget Myers, Elzbieta Sliwerska, Sarah Emery, John V. Moran, Adam R. Boyko, Jeffrey M. Kidd

bioRxiv 2020.07.31.231761; doi: https://doi.org/10.1101/2020.07.31.231761 New Results

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An evolutionary perspective of DNA methylation patterns in skeletal tissues using a nonhuman primate model of osteoarthritis
Genevieve Housman, Ellen E. Quillen, Anne C. Stone

bioRxiv 2020.07.31.231522; doi: https://doi.org/10.1101/2020.07.31.231522 New Results

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Genomics

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