Genomics

Simultaneous Profiling of Chromatin Accessibility and DNA Methylation in Complete Plant Genomes Using Long-Read Sequencing
Basile Leduque, Alejandro Edera, Clementine Vitte, Leandro Quadrana

bioRxiv 2023.11.15.567180; doi: https://doi.org/10.1101/2023.11.15.567180 New Results

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Opportunistic bacteria of grapevine crown galls are equipped with the genomic repertoire for opine utilization
Hanna Faist, Markus J. Ankenbrand, Wiebke Sickel, Ute Hentschel, Alexander Keller, Rosalia Deeken

bioRxiv 2023.06.20.545721; doi: https://doi.org/10.1101/2023.06.20.545721 New Results

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A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers
Gagandeep Singh, Mohammed Alser, Kristof Denolf, Can Firtina, Alireza Khodamoradi, Meryem Banu Cavlak, Henk Corporaal, Onur Mutlu

bioRxiv 2022.11.20.517297; doi: https://doi.org/10.1101/2022.11.20.517297 New Results

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Natural variation in yeast reveals multiple paths for acquiring higher stress resistance
Amanda N. Scholes, Tara N. Stuecker, Stephanie E. Hood, Cader J. Locke, Jeffrey A. Lewis

bioRxiv 2023.11.20.567940; doi: https://doi.org/10.1101/2023.11.20.567940 New Results

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Astyanax mexicanus surface and cavefish chromosome-scale assemblies for trait variation discovery
Wesley C. Warren, Edward S. Rice, X Maggs, Emma Roback, Alex Keene, Fergal Martin, Denye Ogeh, Leanne Haggerty, Rachel A. Carroll, Suzanne McGaugh, Nicolas Rohner

bioRxiv 2023.11.16.567450; doi: https://doi.org/10.1101/2023.11.16.567450 New Results

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Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes
Yihan Wang, Daniel Armendariz, Lei Wang, Huan Zhao, Shiqi Xie, Gary C. Hon

bioRxiv 2023.11.20.567880; doi: https://doi.org/10.1101/2023.11.20.567880 New Results

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An appropriate differential expression analysis in single-cell data depends on the study design
Hanbin Lee, Buhm Han

bioRxiv 2023.01.09.523212; doi: https://doi.org/10.1101/2023.01.09.523212 New Results

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Activity of MukBEF for chromosome management in E. coli and its inhibition by MatP
Mohammed Seba, Frédéric Boccard, Stéphane Duigou

bioRxiv 2023.08.30.555477; doi: https://doi.org/10.1101/2023.08.30.555477 New Results

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Genetic regulatory effects in response to a high cholesterol, high fat diet in baboons
Wenhe Lin, Jeffrey D. Wall, Ge Li, Deborah Newman, Yunqi Yang, Mark Abney, John L. VandeBerg, Michael Olivier, Yoav Gilad, Laura A. Cox

bioRxiv 2023.08.01.551489; doi: https://doi.org/10.1101/2023.08.01.551489 New Results

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Brd2 is dispensable for genome compartmentalization and replication timing
Laura Hinojosa-Gonzalez, Jesse L. Turner, Takayo Sasaki, Ferhat Ay, David M. Gilbert

bioRxiv 2023.11.17.567572; doi: https://doi.org/10.1101/2023.11.17.567572 Contradictory Results

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Genomics

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