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Genomics

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  • Enhanced functional divergence of duplicate genes several million years after gene duplication in the Arabidopsis lineage
    Kousuke Hanada, Ayumi Tezuka, Masafumi Nozawa, Yutaka Suzuki, Sumio Sugano, Atsushi J. Nagano, Motomi Ito, Shi-Ichi Morinaga
    bioRxiv 047639; doi: https://doi.org/10.1101/047639
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  • Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections
    Chandler C Roe, Kimberly S Horn, Elizabeth M Driebe, Jolene Bowers, Joel A Terriquez, Paul Keim, David M Engelthaler
    bioRxiv 047597; doi: https://doi.org/10.1101/047597
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  • The dynamic landscape of fission yeast meiosis alternative-splice isoforms
    Zheng Kuang, Jef D. Boeke, Stefan Canzar
    bioRxiv 045922; doi: https://doi.org/10.1101/045922
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  • FlashPCA: fast sparse canonical correlation analysis of genomic data
    Gad Abraham, Michael Inouye
    bioRxiv 047217; doi: https://doi.org/10.1101/047217
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  • ATRX binds to atypical chromatin domains at the 3’ exons of ZNF genes to preserve H3K9me3 enrichment
    David Valle-García, Zulekha A. Qadeer, Domhnall S. McHugh, Flávia G. Ghiraldini, Asif H. Chowdhury, Dan Hasson, Michael A. Dyer, Félix Recillas-Targa, Emily Bernstein
    bioRxiv 027789; doi: https://doi.org/10.1101/027789
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  • Wide genome involvement in response to long-term selection for antibody response in an experimental population of White Leghorn chickens
    Mette Lillie, Zheya Sheng, Christa Honaker, Ben Dorshorst, Paul Siegel, Örjan Carlborg
    bioRxiv 046953; doi: https://doi.org/10.1101/046953
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  • Cognitive Domains Function Complementation by NTNG Gene Paralogs
    Pavel Prosselkov, Denis Polygalov, Qi Zhang, Thomas J. McHugh, Shigeyoshi Itohara
    bioRxiv 034645; doi: https://doi.org/10.1101/034645
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  • Cognitive Endophenotypes of Modern and Extinct Hominins Associated with NTNG Gene Paralogs
    Pavel Prosselkov, Ryota Hashimoto, Denis Polygalov, Kazutaka Ohi, Qi Zhang, Thomas J. McHugh, Masatoshi Takeda, Shigeyoshi Itohara
    bioRxiv 034413; doi: https://doi.org/10.1101/034413
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  • Cytosine Variant Calling with High-throughput Nanopore Sequencing
    Arthur C. Rand, Miten Jain, Jordan Eizenga, Audrey Musselman-Brown, Hugh E. Olsen, Mark Akeson, Benedict Paten
    bioRxiv 047134; doi: https://doi.org/10.1101/047134
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  • Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer
    Jared T Simpson, Rachael Workman, P. C. Zuzarte, Matei David, L. J. Dursi, Winston Timp
    bioRxiv 047142; doi: https://doi.org/10.1101/047142
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