Genomics

Validation of methods for Low-volume RNA-seq
Peter A. Combs, Michael B. Eisen

bioRxiv 006130; doi: https://doi.org/10.1101/006130 Confirmatory Results

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Avoiding test set bias with rank-based prediction
Prasad Patil, Pierre-Olivier Bachant-Winner, Benjamin Haibe-Kains, Jeffrey T. Leek

bioRxiv 005983; doi: https://doi.org/10.1101/005983

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Power analysis of artificial selection experiments using efficient whole genome simulation of quantitative traits
Darren Kessner, John Novembre

bioRxiv 005892; doi: https://doi.org/10.1101/005892

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Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm
Yi-Chieh Wu, Mukul S. Bansal, Matthew D. Rasmussen, Javier Herrero, Manolis Kellis

bioRxiv 005736; doi: https://doi.org/10.1101/005736

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Human genomic regions with exceptionally high or low levels of population differentiation identified from 911 whole-genome sequences
Vincenza Colonna, Qasim Ayub, Yuan Chen, Luca Pagani, Pierre Luisi, Marc Pybus, Erik Garrison, Yali Xue, Chris Tyler-Smith, The 1000 Genomes Project Consortium

bioRxiv 005462; doi: https://doi.org/10.1101/005462

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Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis
M. Carrara, J. Lum, F. Cordero, M. Beccuti, M. Poidinger, S. Donatelli, R. A. Calogero, F. Zolezzi

bioRxiv 005546; doi: https://doi.org/10.1101/005546

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Profiling direct mRNA-microRNA interactions using synthetic biotinylated microRNA-duplexes
Shivangi Wani, Nicole Cloonan

bioRxiv 005439; doi: https://doi.org/10.1101/005439 Confirmatory Results

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IVT-seq reveals extreme bias in RNA-sequencing
Nicholas F. Lahens, Ibrahim Halil Kavakli, Ray Zhang, Katharina Hayer, Michael B. Black, Hannah Dueck, Angel Pizarro, Junhyong Kim, Rafael Irizarry, Russell S. Thomas, Gregory R. Grant, John B. Hogenesch

bioRxiv 005371; doi: https://doi.org/10.1101/005371

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CasFinder: Flexible algorithm for identifying specific Cas9 targets in genomes
John Aach, Prashant Mali, George M. Church

bioRxiv 005074; doi: https://doi.org/10.1101/005074

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Mosaic Epigenetic Dysregulation of Ectodermal Cells in Autism Spectrum Disorder
Esther R. Berko, Masako Suzuki, Faygel Beren, Christophe Lemetre, Christine M. Alaimo, R. Brent Calder, Karen Ballaban-Gil, Batya Gounder, Kaylee Kampf, Jill Kirschen, Shahina B. Maqbool, Zeineen Momin, David M. Reynolds, Natalie Russo, Lisa Shulman, Edyta Stasiek, Jessica Tozour, Maria Valicenti-McDermott, Shenglong Wang, Brett S. Abrahams, Joseph Hargitai, Dov Inbar, Zhengdong Zhang, Joseph D. Buxbaum, Sophie Molholm, John J. Foxe, Robert W. Marion, Adam Auton, John M. Greally

bioRxiv 004853; doi: https://doi.org/10.1101/004853

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Genomics

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