Genomics

Distinct molecular etiologies of male and female hepatocellular carcinoma
Heini M. Natri, Melissa A. Wilson, Kenneth Buetow

bioRxiv 507939; doi: https://doi.org/10.1101/507939
Genome sequence of the model rice variety KitaakeX
Rashmi Jain, Jerry Jenkins, Shengqiang Shu, Mawsheng Chern, Joel A. Martin, Dario Copetti, Phat Q. Duong, Nikki T. Pham, David A. Kudrna, Jayson Talag, Wendy S. Schackwitz, Anna M. Lipzen, David Dilworth, Diane Bauer, Jane Grimwood, Catherine R. Nelson, Feng Xing, Weibo Xie, Kerrie W. Barry, Rod A. Wing, Jeremy Schmutz, Guotian Li, Pamela C. Ronald

bioRxiv 653089; doi: https://doi.org/10.1101/653089
SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome
Lesley M Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric Dawson, Garan Jones, Daniel Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza Ahmed, Graeme Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook

bioRxiv 581264; doi: https://doi.org/10.1101/581264
High-throughput identification of genes involved in single and multi-drug resistance in pancreatic cancer with pooled CRISPR screening
Ryne C. Ramaker, Andrew A. Hardigan, Emily R. Gordon, Richard M. Myers, Sara J. Cooper

bioRxiv 648709; doi: https://doi.org/10.1101/648709
Gene-to-Protein-to-Disease: a segmentation-based approach to identify new cancer prognostic signatures of exome sequence variants
Ginny X.L. Li, Dan Munro, Damian Fermin, Christine Vogel, Hyungwon Choi

bioRxiv 653683; doi: https://doi.org/10.1101/653683
Markov chains applied to molecular evolution simulation
Joel Valdivia Ortega

bioRxiv 653972; doi: https://doi.org/10.1101/653972
GATA3 mutation disrupts a functional network governed by estrogen receptor, FOXA1 and GATA3
Motoki Takaku, Sara A. Grimm, Bony De Kumar, Brian D. Bennett, Paul A. Wade

bioRxiv 654871; doi: https://doi.org/10.1101/654871
Extensive transcriptional changes in the aphid species Myzus cerasi under different host environments associated with detoxification genes
Peter Thorpe, Carmen M. Escudero-Martinez, Sebastian Eves-van den Akker, Jorunn I.B. Bos

bioRxiv 366450; doi: https://doi.org/10.1101/366450
Single-cell transcriptional diversity is a hallmark of developmental potential
Gunsagar S. Gulati, Shaheen S. Sikandar, Daniel J. Wesche, Anoop Manjunath, Anjan Bharadwaj, Mark J. Berger, Francisco Ilagan, Angera H. Kuo, Robert W. Hsieh, Shang Cai, Maider Zabala, Ferenc A. Scheeren, Neethan A. Lobo, Dalong Qian, Feiqiao B. Yu, Frederick M. Dirbas, Michael F. Clarke, Aaron M. Newman

bioRxiv 649848; doi: https://doi.org/10.1101/649848
Systematic re-annotation of 191 genes associated with early-onset epilepsy unmasks de novo variants linked to Dravet syndrome in novel SCN1A exons
Charles A. Steward, Jolien Roovers, Marie-Marthe Suner, Jose M. Gonzalez, Barbara Uszczynska-Ratajczak, Dmitri Pervouchine, Stephen Fitzgerald, Margarida Viola, Hannah Stamberger, Fadi F. Hamdan, Berten Ceulemans, Patricia Leroy, Caroline Nava, Anne Lepine, Electra Tapanari, Don Keiller, Stephen Abbs, Alba Sanchis-Juan, Detelina Grozeva, Anthony S. Rogers, James Wright, Jyoti Choudhary, Mark Diekhans, Roderic Guigó, Robert Petryszak, Berge A. Minassian, Gianpiero Cavalleri, Dimitrios Vitsios, Slavé Petrovski, Jennifer Harrow, Paul Flicek, F. Lucy Raymond, Nicholas J. Lench, Peter De Jonghe, Jonathan M. Mudge, Sarah Weckhuysen, Sanjay M. Sisodiya, Adam Frankish

bioRxiv 648576; doi: https://doi.org/10.1101/648576

Genomics

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