Genomics

Longitudinal differential abundance analysis of microbial marker-gene surveys using smoothing splines
Joseph N. Paulson, Hisham Talukder, Héctor Corrada Bravo

bioRxiv 099457; doi: https://doi.org/10.1101/099457

Add to Selected Citations
Closed-reference metatranscriptomics enables in planta profiling of putative virulence activities in the grapevine trunk-disease complex
Abraham Morales-Cruz, Gabrielle Allenbeck, Rosa Figueroa-Balderas, Vanessa E. Ashworth, Daniel P. Lawrence, Renaud Travadon, Rhonda J. Smith, Kendra Baumgartner, Philippe E. Rolshausen, Dario Cantu

bioRxiv 099275; doi: https://doi.org/10.1101/099275

Add to Selected Citations
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Josh Quick, Nathan D Grubaugh, Steven T Pullan, Ingra M Claro, Andrew D Smith, Karthik Gangavarapu, Glenn Oliveira, Refugio Robles-Sikisaka, Thomas F Rogers, Nathan A Beutler, Dennis R Burton, Lia Laura Lewis-Ximenez, Jaqueline Goes de Jesus, Marta Giovanetti, Sarah Hill, Allison Black, Trevor Bedford, Miles W Carroll, Marcio Nunes, Luiz Carlos Alcantara Jr., Ester C Sabino, Sally A Baylis, Nuno Faria, Matthew Loose, Jared T Simpson, Oliver G Pybus, Kristian G Andersen, Nicholas J Loman

bioRxiv 098913; doi: https://doi.org/10.1101/098913

Add to Selected Citations
Evaluation of the accuracy of imputed sequence variants and their utility for causal variant detection in cattle
Hubert Pausch, Iona M MacLeod, Ruedi Fries, Reiner Emmerling, Phil J Bowman, Hans D Daetwyler, Michael E Goddard

bioRxiv 085399; doi: https://doi.org/10.1101/085399

Add to Selected Citations
Targeted degradation of CTCF decouples local insulation of chromosome domains from higher-order genomic compartmentalization
Elphège P. Nora, Anton Goloborodko, Anne-Laure Valton, Johan Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A. Mirny, Benoit G. Bruneau

bioRxiv 095802; doi: https://doi.org/10.1101/095802

Add to Selected Citations
Modulation of global transcriptional regulatory networks as a strategy for increasing kanamycin resistance of EF-G mutants
Aalap Mogre, Aswin Sai Narain Seshasayee

bioRxiv 059501; doi: https://doi.org/10.1101/059501

Add to Selected Citations
A Comparison of mRNA Sequencing with Random Primed and 3’-Directed Libraries
Yuguang Xiong, Magali Soumillon, Jie Wu, Jens Hansen, Bin Hu, Johan G.C. van Hasselt, Gomathi Jayaraman, Ryan Lim, Mehdi Bouhaddou, Loren Ornelas, Jim Bochicchio, Lindsay Lenaeus, Jennifer Stocksdale, Jaehee Shim, Emilda Gomez, Dhruv Sareen, Clive Svendsen, Leslie M. Thompson, Milind Mahajan, Ravi Iyengar, Eric A. Sobie, Evren U. Azeloglu, Marc R. Birtwistle

bioRxiv 098905; doi: https://doi.org/10.1101/098905

Add to Selected Citations
Dual RNA sequencing (dRNA-Seq) of bacteria and their host cells
James W. Marsh, Regan Hayward, Amol Shetty, Anup Mahurkar, Michael S. Humphrys, Garry S. A. Myers

bioRxiv 098715; doi: https://doi.org/10.1101/098715

Add to Selected Citations
The Early Pregnancy Human Placenta Shares Hypomethylation Patterns Characteristic of Solid Tumors
Akpéli V. Nordor, Djamel Nehar-Belaid, Sophie Richon, David Klatzmann, Dominique Bellet, Virginie Dangles-Marie, Thierry Fournier, Martin J. Aryee

bioRxiv 098616; doi: https://doi.org/10.1101/098616

Add to Selected Citations
Molecular and functional variation in iPSC-derived sensory neurons
Jeremy Schwartzentruber, Stefanie Foskolou, Helena Kilpinen, Julia Rodrigues, Kaur Alasoo, Andrew J Knights, Minal Patel, Angela Goncalves, Rita Ferreira, Caroline Louise Benn, Anna Wilbrey, Magda Bictash, Emma Impey, Lishuang Cao, Sergio Lainez, Alexandre Julien Loucif, Paul John Whiting, HIPSCI Consortium (www.hipsci.org), Alex Gutteridge, Daniel J Gaffney

bioRxiv 095943; doi: https://doi.org/10.1101/095943

Add to Selected Citations

Genomics

Pages