Genomics

Genome-wide analysis of ivermectin response by Onchocerca volvulus reveals that genetic drift and soft selective sweeps contribute to loss of drug sensitivity
Stephen R. Doyle, Catherine Bourguinat, Hugues C. Nana-Djeunga, Jonas A. Kengne-Ouafo, Sébastien D.S. Pion, Jean Bopda, Joseph Kamgno, Samuel Wanji, Hua Che, Annette C. Kuesel, Martin Walker, Maria-Gloria Basáñez, Daniel A. Boakye, Mike Y. Osei-Atweneboana, Michel Boussinesq, Roger K. Prichard, Warwick N. Grant

bioRxiv 094540; doi: https://doi.org/10.1101/094540

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An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
Ole K. Tørresen, Bastiaan Star, Sissel Jentoft, William B. Reinar, Harald Grove, Jason R. Miller, Brian P. Walenz, James Knight, Jenny M. Ekholm, Paul Peluso, Rolf B. Edvardsen, Ave Tooming-Klunderud, Morten Skage, Sigbjørn Lien, Kjetill S. Jakobsen, Alexander J. Nederbragt

bioRxiv 060921; doi: https://doi.org/10.1101/060921

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Two novel lncRNAs discovered in human mitochondrial DNA using PacBio full-length transcriptome data
Shan Gao, Xiaoxuan Tian, Yu Sun, Zhenfeng Wu, Zhi Cheng, Pengzhi Dong, Qiang Zhao, Bingjun He, Jishou Ruan, Wenjun Bu

bioRxiv 079517; doi: https://doi.org/10.1101/079517 Confirmatory Results

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Retroviral origins of the Caenorhabditis elegans orphan gene F58H7.5
Wadim J Kapulkin MRCVS, DVM, PhD

bioRxiv 073510; doi: https://doi.org/10.1101/073510

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Recombinant DNA resources for the comparative genomics of Ancylostoma ceylanicum
Wadim J. Kapulkin, Adriana Magalska, Ewa Janecka, Arkadiusz Ciesielski, Malgorzata Lobocka, Jerzy M. Behnke, Halina Wedrychowicz

bioRxiv 092494; doi: https://doi.org/10.1101/092494

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Cohesin dependent compaction of mitotic chromosomes
Stephanie A. Schalbetter, Anton Goloborodko, Geoffrey Fudenberg, Jon M. Belton, Catrina Miles, Miao Yu, Job Dekker, Leonid Mirny, Jon Baxter

bioRxiv 094946; doi: https://doi.org/10.1101/094946

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YeATSAM analysis of the chloroplast genome of walnut reveals several putative un-annotated genes and mis-annotation of the trans-spliced rps12 gene in other organisms
Sandeep Chakraborty

bioRxiv 094441; doi: https://doi.org/10.1101/094441

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FlashPCA2: principal component analysis of biobank-scale genotype datasets
Gad Abraham, Yixuan Qiu, Michael Inouye

bioRxiv 094714; doi: https://doi.org/10.1101/094714

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A dense brown trout (Salmo trutta) linkage map reveals recent chromosomal rearrangements in the Salmo genus and the impact of selection on linked neutral diversity
Maeva Leitwein, Bruno Guinand, Juliette Pouzadoux, Erick Desmarais, Patrick Berrebi, Pierre-Alexandre Gagnaire

bioRxiv 094763; doi: https://doi.org/10.1101/094763

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Co-occurring eQTLs and mQTLs: detecting shared causal variants and shared biological mechanisms
Brandon L. Pierce, Lin Tong, Maria Argos, Farzana Jasmine, Muhammad Rakibuz-Zaman, Golam Sarwar, Md. Tariqul Islam, Hasan Shahriar, Tariqul Islam, Mahfuzar Rahman, Md. Yunus, Muhammad G. Kibriya, Lin S. Chen, Habibul Ahsan

bioRxiv 094656; doi: https://doi.org/10.1101/094656

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Genomics

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