Genomics

Recycler: an algorithm for detecting plasmids from de novo assembly graphs
Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, Ron Shamir

bioRxiv 029926; doi: https://doi.org/10.1101/029926

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Transcriptomic analysis of diplomonad parasites reveals a trans-spliced intron in a helicase gene in Giardia
Scott William Roy

bioRxiv 052134; doi: https://doi.org/10.1101/052134

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Drosophila poised enhancers are generated during tissue patterning with the help of repression
Nina Koenecke, Jeff Johnston, Qiye He, Julia Zeitlinger

bioRxiv 052142; doi: https://doi.org/10.1101/052142

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AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data
Runxuan Zhang, Cristiane P. G. Calixto, Yamile Marquez, Peter Venhuizen, Nikoleta A. Tzioutziou, Wenbin Guo, Mark Spensley, Nicolas Frei dit Frey, Heribert Hirt, Allan B. James, Hugh G. Nimmo, Andrea Barta, Maria Kalyna, John W. S. Brown

bioRxiv 051938; doi: https://doi.org/10.1101/051938

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A novel homology-based algorithm for the identification of physically linked clusters of paralogous genes
Juan F. Ortiz, Antonis Rokas

bioRxiv 051953; doi: https://doi.org/10.1101/051953

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Brain Transcriptional Profiles of Male Alternative Reproductive Tactics and Females in Bluegill Sunfish
Charlyn G. Partridge, Matthew D. MacManes, Rosemary Knapp, Bryan D. Neff

bioRxiv 025916; doi: https://doi.org/10.1101/025916

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Capturing Evolutionary Signatures in Transcriptomes with myTAI
Hajk-Georg Drost, Alexander Gabel, Tomislav Domazet-Lošo, Marcel Quint, Ivo Grosse

bioRxiv 051565; doi: https://doi.org/10.1101/051565 Confirmatory Results

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A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle
Hermann Schwarzenbacher, Johann Burgstaller, Franz R. Seefried, Christine Wurmser, Monika Hilbe, Simone Jung, Christian Fuerst, Nora Dinhopl, Herbert Weissenböeck, Birgit Fuerst-Waltl, Marlies Dolezal, Reinhard Winkler, Oskar Grueter, Ulrich Bleul, Thomas Wittek, Ruedi Fries, Hubert Pausch

bioRxiv 041921; doi: https://doi.org/10.1101/041921

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Identification and qualification of 500 nuclear, single-copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon-capture
Luisa C. Teasdale, Frank Köehler, Kevin D. Murray, Tim O’Hara, Adnan Moussalli

bioRxiv 035543; doi: https://doi.org/10.1101/035543

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Approaches to estimating inbreeding coefficients in clinical isolates of Plasmodium falciparum from genomic sequence data
Lucas Amenga-Etego, Ruiqi Li, John D. O’Brien

bioRxiv 021519; doi: https://doi.org/10.1101/021519

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Genomics

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