Genomics

First intron length in mammals is associated with 5’ exon skipping rate
Seung Gu Park, Sridhar Hannenhalli

bioRxiv 024463; doi: https://doi.org/10.1101/024463

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Crowdsourcing: Spatial clustering of low-affinity binding sites amplifies in vivo transcription factor occupancy
Justin Malin, Daphne Ezer, Xiaoyan Ma, Steve Mount, Hiren Karathia, Seung Gu Park, Boris Adryan, Sridhar Hannenhalli

bioRxiv 024398; doi: https://doi.org/10.1101/024398

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Epistasis within the MHC contributes to the genetic architecture of celiac disease
Benjamin Goudey, Gad Abraham, Eder Kikianty, Qiao Wang, Dave Rawlinson, Fan Shi, Izhak Haviv, Linda Stern, Adam Kowalczyk, Michael Inouye

bioRxiv 002485; doi: https://doi.org/10.1101/002485

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A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson

bioRxiv 024323; doi: https://doi.org/10.1101/024323

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Endogenous human stem cell-associated retroviruses
Gennadi V. Glinsky

bioRxiv 024273; doi: https://doi.org/10.1101/024273

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Landscape and dynamics of transcription initiation in the malaria parasite Plasmodium falciparum
Sophie H. Adjalley, Christophe D. Chabbert, Bernd Klaus, Vicent Pelechano, Lars M. Steinmetz

bioRxiv 024356; doi: https://doi.org/10.1101/024356

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Impact of the X chromosome and sex on regulatory variation
Kimberly R. Kukurba, Princy Parsana, Kevin S. Smith, Zachary Zappala, David A. Knowles, Marie-Julie Favé, Xin Li, Xiaowei Zhu, James B. Potash, Myrna M. Weissman, Jianxin Shi, Anshul Kundaje, Douglas F. Levinson, Philip Awadalla, Sara Mostafavi, Alexis Battle, Stephen B. Montgomery

bioRxiv 024117; doi: https://doi.org/10.1101/024117

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Perturbative formulation of general continuous-time Markov model of sequence evolution via insertions/deletions, Part IV: Incorporation of substitutions and other mutations
Kiyoshi Ezawa, Dan Graur, Giddy Landan

bioRxiv 023622; doi: https://doi.org/10.1101/023622

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Genomic DNA transposition induced by human PGBD5
Anton G. Henssen, Elizabeth Henaff, Eileen Jiang, Amy R. Eisenberg, Julianne R. Carson, Camila M. Villasante, Mondira Ray, Eric Still, Melissa Burns, Jorge Gandara, Cedric Feschotte, Christopher E. Mason, Alex Kentsis

bioRxiv 023887; doi: https://doi.org/10.1101/023887

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Species Tree Estimation from Genome-wide Data with Guenomu
Leonardo de Oliveira Martins, David Posada

bioRxiv 023861; doi: https://doi.org/10.1101/023861 Confirmatory Results

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Genomics

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